Construct: ORF ccsbBroadEn_10342

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004248.1_s300c1, BRDN0000389930
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDXDC2P-NPIPB14P (283970)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450197.1 85.9% 82.6% (many diffs)
2 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452518.1 85.9% 82.6% (many diffs)
3 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450194.1 84.8% 83.4% (many diffs)
4 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324021.1 84.8% 80% (many diffs)
5 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030210.2 84.8% 80% (many diffs)
6 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023065.1 83.6% 82.1% (many diffs)
7 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324020.1 81.3% 79.8% (many diffs)
8 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285449.1 81.1% 79.7% (many diffs)
9 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030209.2 81.1% 79.7% (many diffs)
10 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450196.1 80.7% 79.4% (many diffs)
11 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_024450195.1 78.3% 76.9% (many diffs)
12 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452517.1 78.3% 76.9% (many diffs)
13 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030208.2 77% 72.7% (many diffs)
14 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452516.1 75% 73.8% (many diffs)
15 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285450.2 74.9% 72.7% (many diffs)
16 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030207.1 74.1% 72.8% (many diffs)
17 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030206.1 57.5% 54% (many diffs)
18 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023063.1 57.2% 55.9% (many diffs)
19 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030205.2 56% 54.7% (many diffs)
20 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_006720865.2 52.8% 50.4% (many diffs)
21 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023064.1 52.8% 50.4% (many diffs)
22 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285445.2 52.7% 49.9% (many diffs)
23 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285444.2 52.6% 49.4% (many diffs)
24 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725228.2 52.6% 49.4% (many diffs)
25 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030204.1 52.5% 51.4% (many diffs)
26 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285447.1 52.3% 51.2% (many diffs)
27 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_005255176.3 52.3% 51.2% (many diffs)
28 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023059.1 52.3% 51.2% (many diffs)
29 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023061.2 52.3% 51.2% (many diffs)
30 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023062.1 52.3% 51.2% (many diffs)
31 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030203.2 52.3% 51.2% (many diffs)
32 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_024452515.1 52.3% 51.2% (many diffs)
33 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001324019.2 51.4% 50.3% (many diffs)
34 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_015027.4 51.3% 50.2% (many diffs)
35 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725225.2 51.3% 50.2% (many diffs)
36 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725226.2 51.1% 48.2% (many diffs)
37 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725224.2 50.8% 49.6% (many diffs)
38 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_017023060.1 50.8% 49.6% (many diffs)
39 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030202.1 50.4% 49.3% (many diffs)
40 human 23042 PDXDC1 pyridoxal dependent decarbo... XM_005255173.1 50.2% 49.1% (many diffs)
41 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_006725223.1 50.2% 49.1% (many diffs)
42 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030201.1 49.5% 46.5% (many diffs)
43 human 23042 PDXDC1 pyridoxal dependent decarbo... NM_001285448.1 48.8% 45.3% (many diffs)
44 human 102724985 LOC102724985 pyridoxal-dependent decarbo... XM_017030200.1 48.5% 47.4% (many diffs)
45 human 283970 PDXDC2P-NPIPB14P nuclear pore complex-intera... NR_003610.1 28.7% 1_343del;1580_4298del
46 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001039533.2 50.7% 52.6% (many diffs)
47 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246055.3 46.6% 48.3% (many diffs)
48 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_053181.3 45.7% 47.5% (many diffs)
49 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001357225.1 45.7% 47.4% (many diffs)
50 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... NM_001291017.1 45.6% 47.4% (many diffs)
51 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246054.3 45.3% 47.1% (many diffs)
52 mouse 94184 Pdxdc1 pyridoxal-dependent decarbo... XM_011246053.2 45.3% 47% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1302
ORF length:
1236
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GAGCATCCTC CAGTTAGTTC AGAATCTGAT GCATGGAGAT GAAGATGAGG
121AGCCCCAGAG CCCCAGAATC CAAAATATTG GAGAACAAGG TCATGTGGCT GTGTTGGGAC
181ATAGTCTGGG AGCTTATATT TTGACTCTGG ACGAAGAGAA GCTGAGAAAA CTTACAACTA
241GGATACTTTC AGATACCACC TTATGGCTAT GCAGAATTTT CAGATATGAA AATGGGTGTG
301CTTATTTCCA CGAAGAGGAA AGAGAAGGAC TTGCAAAGAT ATGTAGGCTT GCCATTCATT
361CTCAATATGA AGACTTCGTA GTGGATGGCT TCAGTGGGTT ATATAACAAG AAGCCTGTCA
421TATATCTTAG TGCTGCTGCT AGACCTGGCC TGGGCCAATA CCTTTGTAAT CAGCTCGGCT
481TGCCCTTCCC CTGCTTGTGC CGTGTACCCT GTAACACTAT GTTTGGATCC CAGCATCAGA
541TGGATGTTGC CTTCCTGGAG AAACTGATTA AAGATGATAT AGAGCGAGGA AGACTGCCCC
601TGTTGCTTGT CGCAAATGCA GGAACGGCAG CAGTAGGACA CACAGACAAG ATTGGGAGAT
661TGAAAGAACT CTGTGAGCAG TATGGCATAT GGCTTCATGT GGAGGGTGTG AATCTGGCAA
721CATTGGCTCT GGGTTATGTC TCCTCATCAG TGCTGGCTGC AGCCAAATGT GATAGCATGA
781CGATGACTCC TGGCCCGTGG CTGGGTTTGC CAGCTGTTCC TGCGGTGACA CTGTATAAAC
841ACGACCCTGC CTTGACTTTA GTTGCTGGTC TTATATCAAA TAAGCCCACA GACAAACTCC
901GTGCCCTGCC TCTGTGGTTA TCTTTACAAT ACTTGGGACT TGATGGGTTT GTGGAGAGGA
961TCAAGCATGC CTGTCAACTG AGTCAATGGT TGCAGGAAAG TTTGAAGAAA GTGAATTACA
1021TCAAAATCTT GGTGGAAGAT GAGCTCAGCT CCCCAGTGGT GGTGTTCAGA TTTTTCCAAG
1081AATTACCAGG CTCAGATCCA GTGTTTAAAG CCGTCCCAGT GCCCAACATG ACACCTTCAG
1141CAGTCGGCCG GGAGAGGCAC TCGTGTGATG CGCTGAATCT CTGGCTGGGA GAACAGCTGA
1201AGCAGCTGGT GCCTGCGAGC GGCCTCACAG TCATGGATCT GGAAGCTGAG GGCACGTGTT
1261TGCGGTTCAG CCCTTTGATG ACCGCAGCAG GTATGATCTC GTGCCCAACT TTCTTGTACA
1321AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)