Construct: ORF ccsbBroadEn_10370
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000349.1_s300c1, BRDN0000395000
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BMS1P1 (399761)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100288974 | BMS1P21 | BMS1 pseudogene 21 | NR_033857.1 | 33.8% | (many diffs) | |
| 2 | human | 729096 | BMS1P4 | BMS1 pseudogene 4 | NR_026592.2 | 14% | (many diffs) | |
| 3 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XR_428728.2 | 9.5% | (many diffs) | |
| 4 | human | 113939912 | BMS1P2-AGAP9 | BMS1P2-AGAP9 readthrough | NR_160414.1 | 8.3% | (many diffs) | |
| 5 | human | 113939912 | BMS1P2-AGAP9 | BMS1P2-AGAP9 readthrough | NR_160415.1 | 7.5% | (many diffs) | |
| 6 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XM_005271848.3 | 7.5% | 6.3% | (many diffs) |
| 7 | human | 113939925 | BMS1P4-AGAP5 | BMS1P4-AGAP5 readthough | NR_160427.1 | 7.2% | (many diffs) | |
| 8 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | NM_014753.4 | 7.1% | 6% | (many diffs) |
| 9 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XM_005271846.3 | 7.1% | 6% | (many diffs) |
| 10 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XM_011540402.2 | 7.1% | 6% | (many diffs) |
| 11 | human | 113939925 | BMS1P4-AGAP5 | BMS1P4-AGAP5 readthough | NR_160425.1 | 7.1% | (many diffs) | |
| 12 | human | 399761 | BMS1P1 | BMS1 pseudogene 1 | NR_003611.2 | 6.8% | 1_196del;488_4235del | |
| 13 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XR_246522.1 | 6.7% | (many diffs) | |
| 14 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XR_001747266.1 | 6.6% | (many diffs) | |
| 15 | human | 9790 | BMS1 | BMS1 ribosome biogenesis fa... | XR_002957049.1 | 6.4% | (many diffs) | |
| 16 | human | 642826 | BMS1P2 | BMS1 pseudogene 2 | NR_024495.2 | 6.1% | (many diffs) | |
| 17 | human | 113939925 | BMS1P4-AGAP5 | BMS1P4-AGAP5 readthough | NR_160426.1 | 5.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 360
- ORF length:
- 291
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGACTAAG GACCAGAAGA AACACAGAAA GAAAAACAGT GGACCCAAAG 121 CTGCAAAGAA AAAGAAGTGG CATCTGCAGG ATCTCCAGCT AGGAGACGAA GAAAATGCCC 181 AGAAGAGAAA TGCCAATGCT TTTGCAGTTC AGTCTGCTGT GTGGATGTCT CGATCCTTTC 241 ACAGGACTCT GGATTTGAAG ACACAAAAGC ATCATATTCC AGTGGTTGAT GGAACTCCAC 301 TAGAGCCGCC ACCAATAGCG GTAGTGGTGA CGGGGCCTCC AAAGTTGGAA AGAGCACTTT 361 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac