Construct: ORF ccsbBroadEn_10440

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016907.1_s300c1, BRDN0000385370
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDK18 (5129)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5129 CDK18 cyclin dependent kinase 18 NM_002596.4 99.3% 98.9% (many diffs)
2 human 5129 CDK18 cyclin dependent kinase 18 NM_212502.3 99.3% 98.9% (many diffs)
3 human 5129 CDK18 cyclin dependent kinase 18 NM_212503.3 93.4% 93% (many diffs)
4 human 5129 CDK18 cyclin dependent kinase 18 XM_011509602.3 86.9% 86.5% (many diffs)
5 human 5129 CDK18 cyclin dependent kinase 18 XM_017001423.2 82.3% 81.9% (many diffs)
6 human 5129 CDK18 cyclin dependent kinase 18 XR_002956776.1 38.5% (many diffs)
7 human 5129 CDK18 cyclin dependent kinase 18 XR_426781.4 38.1% (many diffs)
8 human 5129 CDK18 cyclin dependent kinase 18 XR_426784.3 37.8% (many diffs)
9 human 5129 CDK18 cyclin dependent kinase 18 XR_426782.4 37.5% (many diffs)
10 human 5129 CDK18 cyclin dependent kinase 18 XR_001737213.1 36.7% (many diffs)
11 human 5129 CDK18 cyclin dependent kinase 18 XR_426780.4 36.7% (many diffs)
12 human 5129 CDK18 cyclin dependent kinase 18 XR_426779.3 35.9% (many diffs)
13 human 5129 CDK18 cyclin dependent kinase 18 XR_921822.3 35.8% (many diffs)
14 human 5129 CDK18 cyclin dependent kinase 18 XR_001737212.2 34.9% (many diffs)
15 mouse 18557 Cdk18 cyclin-dependent kinase 18 NM_008795.2 85% 86.6% (many diffs)
16 mouse 18557 Cdk18 cyclin-dependent kinase 18 XM_011247940.2 71.4% 73.5% (many diffs)
17 mouse 18557 Cdk18 cyclin-dependent kinase 18 XR_001783189.1 35.5% (many diffs)
18 mouse 18557 Cdk18 cyclin-dependent kinase 18 XR_387152.3 33.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1482
ORF length:
1416
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CAAGATGAAG AACTTTAAGC GCCGTTTCTC CCTGTCAGTG CCCCGCACTG
121AGACCATTGA AGAATCCTTG GCTGAATTCA CGGAGCAATT CAACCAGCTC CACAACCGGC
181GGAATGAGAA CTTGCAGCTC GGTCCTCTTG GCAGAGACCC CCCGCAGGAG TGCAGCACCT
241TCTCCCCAAC AGACAGCGGG GAGGAGCCGG GGCAGCTCTC CCCTGGCGTG CAGTTCCAGC
301GGCGGCAGAA CCAGCGCCGC TTCTCCATGG AGGACGTCAG CAAGAGGCTC TCTCTGCCCA
361TGGATATCCG CCTGCCCCAG GAATTCCTAC AGAAGCTACA GATGGAGAGC CCAGATCTGC
421CCAAGCCGCT CAGCCGCATG TCCCGCCGGG CCTCCCTGTC AGACATTGGC TTTGGGAAAC
481TGGAAACATA CGTGAAACTG GACAAACTGG GAGAGGGCAC CTATGCCACA GTCTTCAAAG
541GGCGCAGCAA ACTGATGGAG AACCTTGTGG CCCTGAAAGA GATCCGGCTG GAGCACGAGG
601AGGGAGCGCC CTGCACTGCC ATCCGAGAGG TGTCTCTGCT GAAGAACCTG AAGCACGCCA
661ATATTGTGAC CCTGCATGAC CTCATCCACA CAGATCGGTC CCTCACCCTG GTGTTTGAGT
721ACCTGGACAG TGACCTGAAG CAGTATCTGG ACCACTGTGG GAACCTCATG AGCATGCACA
781ACGTCAAGAT TTTCATGTTC CAGCTGCTCC GGGGCCTCGC CTACTGTCAC CACCGCAAGA
841TCCTGCACCG GGACCTGAAG CCCCAGAACC TGCTCATCAA CGAGAGGGGG GAGCTGAAGC
901TGGCCGACTT TGGACTGGCC AGGGCCAAGT CAGTGCCCAC AAAGACTTAC TCCAATGAGG
961TGGTGACCCT GTGGTACAGG CCCCCCGATG TGCTGCTGGG ATCCACAGAG TACTCCACCC
1021CCATTGATAT GTGGGGCGTG GGCTGCATCC ACTACGAGAT GGCCACAGGG AGGCCCCTCT
1081TCCCGGGCTC CACAGTCAAG GAGGAGCTGC ACCTCATCTT TCGCCTCCTC GGGACCCCCA
1141CAGAAGAGAC GTGGCCCGGC GTGACCGCCT TCTCTGAGTT CCGCACCTAC AGCTTCCCCT
1201GCTACCTCCC GCAGCCGCTC ATCAACCACG CGCCCAGGTT GGATACGGAT GGCATCCACC
1261TCCTGAGCAG CCTGCTCCTG TATGAATCCA AGAGTCGCAT GTCAGCAGAG GCTGCCCTGA
1321GTCACTCCTA CTTCCGGTCT CTGGGAGAGC GTGTGCACCA GCTTGAAGAC ACTGCCTCCA
1381TCTTCTCCCT GAAGGAGATC CAGCTCCAGA AGGACCCAGG CTACCGAGGC TTGGCCTTCC
1441AGCAGCCAGG ACGAGGGAAG AACAGGCGGC ACAGCATCTT CTGCCCAACT TTCTTGTACA
1501AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)