Construct: ORF ccsbBroadEn_11008
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003842.1_s300c1, BRDN0000386608
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ODF2 (4957)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351586.2 | 94.7% | 94.7% | 1_126del;639A>G |
2 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_002540.5 | 94.7% | 94.7% | 1_126del;639A>G |
3 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351588.2 | 93.1% | 87.7% | (many diffs) |
4 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001242352.1 | 92.5% | 92.5% | 1_126del;176_232del |
5 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351584.2 | 92.5% | 92.5% | 1_126del;176_232del;696A>G |
6 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351585.2 | 92.5% | 92.5% | 1_126del;176_232del;696A>G |
7 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001242353.2 | 91.9% | 92% | 1_141del;191_247del;711A>G |
8 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153433.2 | 91.9% | 92% | 1_141del;191_247del;711A>G |
9 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351583.2 | 88.9% | 89% | 1_126del;639A>G;1940_2095del |
10 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351587.2 | 88.9% | 88.8% | (many diffs) |
11 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351582.2 | 87.8% | 87.9% | 1_258del;308_364del;828A>G |
12 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351581.1 | 87.3% | 87.3% | 1_273del;323_379del |
13 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351579.2 | 87% | 87.1% | (many diffs) |
14 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351580.2 | 87% | 87.1% | (many diffs) |
15 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153435.1 | 85.4% | 85.4% | 1_390del |
16 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351578.1 | 83.6% | 83.6% | 1_390del;440_496del |
17 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001351577.1 | 79.1% | 79.1% | 1_390del;440_496del;2261_2416del |
18 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153437.2 | 72.5% | 70.7% | (many diffs) |
19 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153440.1 | 72.5% | 70.7% | (many diffs) |
20 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153436.1 | 70.8% | 69.1% | (many diffs) |
21 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_001242354.1 | 70.5% | 64.1% | (many diffs) |
22 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153432.1 | 67.2% | 65.6% | (many diffs) |
23 | human | 4957 | ODF2 | outer dense fiber of sperm ... | NM_153439.1 | 65.3% | 63.7% | (many diffs) |
24 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316304.1 | 85.6% | 92.1% | (many diffs) |
25 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316300.1 | 85.5% | 92% | (many diffs) |
26 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316301.1 | 85.5% | 92% | (many diffs) |
27 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316299.1 | 85% | 91.6% | (many diffs) |
28 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316294.1 | 84.9% | 91.5% | (many diffs) |
29 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316295.1 | 84.9% | 91.5% | (many diffs) |
30 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | NM_001113213.1 | 83.6% | 90% | (many diffs) |
31 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316293.1 | 83.6% | 90% | (many diffs) |
32 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | NM_001177659.1 | 83.5% | 89.9% | (many diffs) |
33 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316290.1 | 83.5% | 89.9% | (many diffs) |
34 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316291.1 | 83.5% | 89.9% | (many diffs) |
35 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316292.1 | 83.5% | 89.9% | (many diffs) |
36 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316289.1 | 83.1% | 89.5% | (many diffs) |
37 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316280.1 | 83% | 89.4% | (many diffs) |
38 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316281.1 | 83% | 89.4% | (many diffs) |
39 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316283.1 | 83% | 89.4% | (many diffs) |
40 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316284.1 | 83% | 89.4% | (many diffs) |
41 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316285.1 | 83% | 89.4% | (many diffs) |
42 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316286.1 | 83% | 89.4% | (many diffs) |
43 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316288.1 | 83% | 89.4% | (many diffs) |
44 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316279.1 | 82.9% | 89.3% | (many diffs) |
45 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316276.1 | 80.7% | 86.9% | (many diffs) |
46 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316275.1 | 80.6% | 86.7% | (many diffs) |
47 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316273.1 | 78.9% | 85% | (many diffs) |
48 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316272.1 | 78.8% | 84.9% | (many diffs) |
49 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316306.1 | 66.1% | 70.3% | (many diffs) |
50 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | NM_013615.3 | 65.7% | 69.9% | (many diffs) |
51 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | NM_001113214.1 | 64.6% | 68.7% | (many diffs) |
52 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | XM_017316305.1 | 64.6% | 68.7% | (many diffs) |
53 | mouse | 18286 | Odf2 | outer dense fiber of sperm ... | NM_001177661.1 | 60.9% | 64.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2355
- ORF length:
- 2289
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA AGGGGACACT GTGAATGTGC GGCGGAGTGT CCGGGTGAAA ACCAAGAATC 121 CACCTCATTG CCTGGAGATC ACGCCACCAT CTTCAGAAAA GCTGGTCTCA GTGATGCGGT 181 TAAGTGACCT CTCTACAGAA GATGATGACT CAGGTCACTG TAAAATGAAC CGTTATGATA 241 AGAAGATTGA TAGTCTAATG AATGCGGTTG GTTGTCTGAA GTCTGAGGTC AAGATGCAAA 301 AAGGTGAGCG CCAGATGGCC AAAAGGTTCC TGGAGGAACG GAAGGAAGAG CTGGAGGAGG 361 TGGCCCACGA ACTGGCTGAG ACTGAGCACG AGAACACGGT GTTGAGGCAC AACATCGAGC 421 GCATGAAGGA GGAGAAGGAC TTCACCATAC TTCAGAAGAA ACACCTACAA CAGGAGAAGG 481 AGTGCCTCAT GTCCAAGCTG GTGGAGGCGG AAATGGATGG GGCTGCGGCT GCCAAGCAGG 541 TCATGGCCTT GAAGGATACC ATCGGGAAGC TGAAAACGGA GAAACAAATG ACCTGCACGG 601 ACATCAACAC CCTGACAAGG CAGAAGGAAC TTCTCCTGCA GAAGCTGAGC ACATTTGAGG 661 AGACCAACCG CACCCTCCGA GACCTCCTGA GGGAACAGCA CTGCAAAGAG GATTCTGAAA 721 GACTAATGGA GCAACAAGGA GCACTGCTGA AACGGCTGGC GGAGGCCGAC TCAGAGAAAG 781 CGCGCCTGCT GTTACTGCTG CAAGACAAGG ACAAGGAGGT GGAAGAGCTC CTTCAGGAAA 841 TACAATGTGA GAAGGCTCAA GCAAAGACAG CCTCTGAGCT TTCTAAATCC ATGGAGTCCA 901 TGCGTGGGCA TTTGCAGGCA CAGCTTCGGT CCAAAGAGGC TGAGAACAGT CGCCTGTGCA 961 TGCAGATTAA GAATCTGGAG CGCAGCGGGA ATCAGCATAA GGCAGAAGTG GAGGCCATCA 1021 TGGAGCAGCT GAAGGAGTTG AAGCAGAAGG GAGACCGAGA CAAAGAGAGC TTGAAGAAGG 1081 CCATCCGAGC CCAGAAGGAG CGAGCCGAGA AGAGCGAGGA GTATGCTGAG CAGCTACACG 1141 TGCAACTCGC TGACAAGGAT CTTTATGTCG CTGAAGCTTT ATCCACTCTG GAATCCTGGA 1201 GGAGCCGCTA CAACCAAGTT GTAAAAGAAA AGGGAGACCT TGAGCTGGAA ATTATTGTCC 1261 TGAATGACCG GGTAACAGAT CTTGTAAACC AACAACAAAC CCTGGAGGAG AAGATGCGGG 1321 AAGACCGGGA TAGCCTGGTG GAGAGACTAC ACCGTCAGAC TGCTGAGTAT TCCGCATTCA 1381 AGCTGGAGAA TGAGAGGCTG AAGGCCAGCT TTGCTCCAAT GGAGGACAAA CTCAACCAGG 1441 CACACCTCGA GGTCCAGCAG CTGAAGGCCT CAGTGAAGAA CTATGAGGGG ATGATTGACA 1501 ACTATAAGAG TCAGGTGATG AAGACCAGAT TGGAGGCTGA TGAAGTAGCT GCCCAGCTAG 1561 AACGCTGTGA CAAAGAGAAC AAGATCCTTA AAGATGAGAT GAACAAAGAG ATTGAGGCGG 1621 CACGAAGGCA GTTCCAGTCT CAGCTGGCTG ACCTGCAGCA GCTCCCTGAC ATCCTGAAGA 1681 TCACGGAGGC GAAGCTGGCT GAGTGCCAAG ACCAACTGCA GGGCTATGAG CGGAAGAACA 1741 TCGACCTCAC AGCCATCATA TCAGACCTGC GCAGCCGGAT CGAACACCAG GGGGACAAGC 1801 TGGAGATGGC GAGAGAGAAA CATCAGGCTT CCCAGAAGGA AAATAAACAG CTGAGTCTGA 1861 AGGTGGATGA ACTGGAGAGG AAACTGGAGG CGACCAGTGC CCAGAATATC GAGTTCCTAC 1921 AGGTGATTGC CAAGAGGGAG GAGGCAATCC ACCAGTCCCA GCTGCGGCTG GAGGAGAAAA 1981 CACGGGAATG TGGGACCCTG GCAAGGCAGT TGGAGAGTGC CATTGAAGAT GCGAGGAGGC 2041 AGGTGGAACA AACCAAGGAG CACGCACTCT CCAAGGAGCG AGCAGCCCAG AACAAAATCC 2101 TGGACCTTGA GACCCAGCTG AGCAGAACCA AAACGGAATT GAGCCAGCTG CGGCGGAGCC 2161 GTGATGATGC GGACCGCCGC TACCAGAGCC GGCTGCAAGA CCTGAAAGAT CGCCTGGAGC 2221 AGTCCGAGAG CACCAACCGC AGCATGCAGA ACTACGTCCA GTTCCTCAAA TCATCATACG 2281 CCAACGTGTT TGGGGATGGT CCCTATTCCA CCTTCCTGAC TAGCTCTCCC ATCCGCTCCC 2341 GATCTCCTCC TGCCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2401 tatcaatttg ttgcaacgaa c