Transcript: Human NM_153436.1

Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
ODF2 (4957)
Length:
2125
CDS:
43..2016

Additional Resources:

NCBI RefSeq record:
NM_153436.1
NBCI Gene record:
ODF2 (4957)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_153436.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140177 GAATGCGGTTGGTTGTCTGAA pLKO.1 435 CDS 100% 4.950 6.930 N ODF2 n/a
2 TRCN0000140822 GACTGCTGAGTATTCCGCATT pLKO.1 1533 CDS 100% 4.050 5.670 N ODF2 n/a
3 TRCN0000280592 GACTGCTGAGTATTCCGCATT pLKO_005 1533 CDS 100% 4.050 5.670 N ODF2 n/a
4 TRCN0000247773 GTGGGAGAATCCACCTCATTG pLKO_005 285 CDS 100% 10.800 7.560 N Odf2 n/a
5 TRCN0000139291 CCGAGACAAAGAGAGCTTGAA pLKO.1 1230 CDS 100% 4.950 3.465 N ODF2 n/a
6 TRCN0000280593 CCGAGACAAAGAGAGCTTGAA pLKO_005 1230 CDS 100% 4.950 3.465 N ODF2 n/a
7 TRCN0000145303 CTTCAGAAGAAACACCTACAA pLKO.1 625 CDS 100% 4.950 3.465 N ODF2 n/a
8 TRCN0000280594 CTTCAGAAGAAACACCTACAA pLKO_005 625 CDS 100% 4.950 3.465 N ODF2 n/a
9 TRCN0000121634 GAAAGACTAATGGAGCAACAA pLKO.1 892 CDS 100% 4.950 3.465 N ODF2 n/a
10 TRCN0000144392 CAACTATAAGAGTCAGGTGAT pLKO.1 1674 CDS 100% 4.050 2.835 N ODF2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153436.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11008 pDONR223 100% 70.8% 69.1% None (many diffs) n/a
2 ccsbBroad304_11008 pLX_304 0% 70.8% 69.1% V5 (many diffs) n/a
3 TRCN0000465232 CTCGCCGGGAATAAGATTTCCTCC pLX_317 14.7% 70.8% 69.1% V5 (many diffs) n/a
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