Construct: ORF ccsbBroadEn_11160
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014116.1_s300c1, BRDN0000388093
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SSX4 (6759)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 548313 | SSX4B | SSX family member 4B | NM_001040612.2 | 93% | 87% | (many diffs) |
| 2 | human | 6759 | SSX4 | SSX family member 4 | NM_175729.1 | 93% | 87% | (many diffs) |
| 3 | human | 280658 | SSX7 | SSX family member 7 | XM_017029431.1 | 71.8% | 60.3% | (many diffs) |
| 4 | human | 548313 | SSX4B | SSX family member 4B | NM_001034832.3 | 67.2% | 55.3% | (many diffs) |
| 5 | human | 6759 | SSX4 | SSX family member 4 | NM_005636.4 | 67.2% | 55.3% | (many diffs) |
| 6 | human | 548313 | SSX4B | SSX family member 4B | XM_017029613.1 | 67.2% | 55.3% | (many diffs) |
| 7 | human | 6759 | SSX4 | SSX family member 4 | XM_017029759.1 | 67.2% | 55.3% | (many diffs) |
| 8 | human | 727837 | SSX2B | SSX family member 2B | NM_001164417.3 | 61.4% | 40.1% | (many diffs) |
| 9 | human | 6757 | SSX2 | SSX family member 2 | NM_175698.2 | 61.4% | 40.1% | (many diffs) |
| 10 | human | 6758 | SSX5 | SSX family member 5 | NM_175723.1 | 61.2% | 43.2% | (many diffs) |
| 11 | human | 6758 | SSX5 | SSX family member 5 | XM_011543949.2 | 61.2% | 43.2% | (many diffs) |
| 12 | human | 6758 | SSX5 | SSX family member 5 | XM_017029758.2 | 61.2% | 43.2% | (many diffs) |
| 13 | human | 6757 | SSX2 | SSX family member 2 | NM_001278697.1 | 54.3% | 35.6% | (many diffs) |
| 14 | human | 727837 | SSX2B | SSX family member 2B | NM_001278702.2 | 54.3% | 35.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 531
- ORF length:
- 462
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAACGGAGAC GACGCCTTTG CAAGGAGACC CAGGGATGAT GCTCAAATAT 121 CAGAGAAGTT ACGAAAGGCC TTCGATGATA TTGCCAAATG CTTCTCTGAG AAGGAGTGGG 181 AGGGGATGAA ATCCTCGGAG AGAATCGTCT GTGTGTATAT GAAGCTGAAC TGTGGGGTCA 241 TGACTAAACT AGGTTTCGGG GTCACCCTCC CACCTTTCAT GCGTAGTGAA CGGGCTGCAG 301 ACTTCCACGG GAATGATTTT GGTGACGATC GAAACCACAG GAATCAGGTT GAACGTCCTC 361 AGATGACTTT CGGCAGCCTC CAGAGAATCT TCCCGAAGGA CCCAAGGGGG GGAAGCATGC 421 CTGGACCCAC GGACTGCGTG AGAGAGGGCA GCTGGTGGTT TATGGGGAGA TCGGCGGCCC 481 TGAGGAGGAT GACGAGTGAC TCCCCTCGGG GATGTGGCAC ATGCCCATGG TTGCCAACTT 541 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac