Construct: ORF ccsbBroadEn_11176

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016759.1_s300c1, BRDN0000389111
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCF4 (6925)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6925 TCF4 transcription factor 4 NM_001369571.1 54.7% 54.7% 1096_2001del
2 human 6925 TCF4 transcription factor 4 NM_001369572.1 54.7% 54.7% 1096_2001del
3 human 6925 TCF4 transcription factor 4 NM_003199.3 54.7% 54.7% 1096_2001del
4 human 6925 TCF4 transcription factor 4 NM_001369573.1 54.5% 54.5% 366_367insCAG;1093_1998del
5 human 6925 TCF4 transcription factor 4 NM_001369574.1 54.5% 54.5% 1066_1067insCAG;1093_1998del
6 human 6925 TCF4 transcription factor 4 NM_001083962.2 54.3% 54.3% 1096_2013del
7 human 6925 TCF4 transcription factor 4 NM_001369567.1 54.3% 54.3% 1096_2013del
8 human 6925 TCF4 transcription factor 4 NM_001369568.1 54.3% 54.3% 1096_2013del
9 human 6925 TCF4 transcription factor 4 NM_001330604.3 54.2% 54.2% 1066_1067insCAG;1093_2010del
10 human 6925 TCF4 transcription factor 4 NM_001369569.1 54.2% 54.2% 366_367insCAG;1093_2010del
11 human 6925 TCF4 transcription factor 4 NM_001369570.1 54.2% 54.2% 366_367insCAG;1093_2010del
12 human 6925 TCF4 transcription factor 4 NM_001243228.2 53.9% 53.9% 550_567del;1114_2031del
13 human 6925 TCF4 transcription factor 4 NM_001243230.1 52.2% 51.5% (many diffs)
14 human 6925 TCF4 transcription factor 4 NM_001306207.1 51.1% 51.1% 0_1ins72;1024_1929del
15 human 6925 TCF4 transcription factor 4 NM_001348219.2 51.1% 51.1% 0_1ins72;1024_1929del
16 human 6925 TCF4 transcription factor 4 NM_001369582.1 51.1% 51.1% 0_1ins72;1024_1929del
17 human 6925 TCF4 transcription factor 4 NM_001369583.1 51.1% 51.1% 0_1ins72;1024_1929del
18 human 6925 TCF4 transcription factor 4 NM_001348220.1 50.9% 50.9% 0_1ins72;294_295insCAG;1021_1926del
19 human 6925 TCF4 transcription factor 4 NM_001369584.1 50.9% 50.9% 0_1ins72;294_295insCAG;1021_1926del
20 human 6925 TCF4 transcription factor 4 NM_001369585.1 50.9% 50.9% 0_1ins72;294_295insCAG;1021_1926del
21 human 6925 TCF4 transcription factor 4 XM_017025950.2 50.8% 50.8% (many diffs)
22 human 6925 TCF4 transcription factor 4 NM_001243227.2 50.8% 50.8% 0_1ins72;1024_1941del
23 human 6925 TCF4 transcription factor 4 NM_001348217.1 50.8% 50.8% 0_1ins72;1024_1941del
24 human 6925 TCF4 transcription factor 4 NM_001348218.2 50.8% 50.8% 0_1ins72;1024_1941del
25 human 6925 TCF4 transcription factor 4 NM_001369575.1 50.8% 50.8% 0_1ins72;1024_1941del
26 human 6925 TCF4 transcription factor 4 NM_001369586.1 50.7% 50.5% 0_1ins72;998_1000delGTA;1027_1944del
27 human 6925 TCF4 transcription factor 4 NM_001369576.1 50.6% 50.6% 0_1ins72;294_295insCAG;1021_1938del
28 human 6925 TCF4 transcription factor 4 NM_001369577.1 50.6% 50.6% 0_1ins72;994_995insCAG;1021_1938del
29 human 6925 TCF4 transcription factor 4 NM_001369578.1 50.6% 50.6% 0_1ins72;294_295insCAG;1021_1938del
30 human 6925 TCF4 transcription factor 4 NM_001369579.1 50.6% 50.6% 0_1ins72;994_995insCAG;1021_1938del
31 human 6925 TCF4 transcription factor 4 NM_001369580.1 50.6% 50.6% 0_1ins72;994_995insCAG;1021_1938del
32 human 6925 TCF4 transcription factor 4 NM_001369581.1 50.6% 50.6% 0_1ins72;294_295insCAG;1021_1938del
33 human 6925 TCF4 transcription factor 4 XM_006722538.3 50.6% 50.6% 0_1ins72;294_295insCAG;1021_1938del
34 human 6925 TCF4 transcription factor 4 NM_001243231.2 48.2% 47.3% (many diffs)
35 human 6925 TCF4 transcription factor 4 NM_001348211.2 47.9% 47% (many diffs)
36 human 6925 TCF4 transcription factor 4 XM_017025951.2 47.7% 46.9% (many diffs)
37 human 6925 TCF4 transcription factor 4 NM_001243226.3 47.2% 47.2% 1_306del;1402_2319del
38 human 6925 TCF4 transcription factor 4 XM_024451241.1 42.6% 42.6% 0_1ins237;859_1776del
39 human 6925 TCF4 transcription factor 4 XM_017025953.2 41.9% 38.7% (many diffs)
40 human 6925 TCF4 transcription factor 4 NM_001306208.1 41.7% 38.5% (many diffs)
41 human 6925 TCF4 transcription factor 4 XM_005266749.4 41.6% 38.5% (many diffs)
42 human 6925 TCF4 transcription factor 4 NM_001243232.1 41.5% 38.3% (many diffs)
43 human 6925 TCF4 transcription factor 4 XM_017025952.2 41.4% 38.2% (many diffs)
44 human 6925 TCF4 transcription factor 4 NM_001243233.2 35.2% 35.2% 0_1ins390;706_1611del
45 human 6925 TCF4 transcription factor 4 NM_001348212.2 35.2% 35.2% 0_1ins390;706_1611del
46 human 6925 TCF4 transcription factor 4 XM_017025956.2 35.2% 35.2% 0_1ins390;706_1611del
47 human 6925 TCF4 transcription factor 4 NM_001330605.3 35% 35% 0_1ins390;706_1623del
48 human 6925 TCF4 transcription factor 4 NM_001348213.2 35% 35% 0_1ins390;706_1623del
49 human 6925 TCF4 transcription factor 4 XM_005266752.5 35% 35% 0_1ins390;706_1623del
50 human 6925 TCF4 transcription factor 4 XM_005266755.5 35% 35% 0_1ins390;706_1623del
51 human 6925 TCF4 transcription factor 4 XM_017025954.2 34.8% 34.8% 0_1ins390;676_677insCAG;703_1620del
52 human 6925 TCF4 transcription factor 4 NM_001243236.2 29.9% 27.5% (many diffs)
53 human 6925 TCF4 transcription factor 4 NM_001348216.2 29.7% 27.4% (many diffs)
54 human 6925 TCF4 transcription factor 4 NM_001243235.2 29.3% 27.1% (many diffs)
55 human 6925 TCF4 transcription factor 4 NM_001348214.2 29.1% 27% (many diffs)
56 human 6925 TCF4 transcription factor 4 NM_001243234.2 29.1% 27% (many diffs)
57 human 6925 TCF4 transcription factor 4 XM_005266761.4 28.9% 26.8% (many diffs)
58 human 6925 TCF4 transcription factor 4 NM_001348215.2 22.2% 22.2% 0_1ins648;448_1365del
59 mouse 21413 Tcf4 transcription factor 4 NM_001083967.1 51.3% 53.6% (many diffs)
60 mouse 21413 Tcf4 transcription factor 4 XM_006525750.3 51.3% 53.6% (many diffs)
61 mouse 21413 Tcf4 transcription factor 4 XM_017317857.1 51.3% 53.6% (many diffs)
62 mouse 21413 Tcf4 transcription factor 4 XM_006525751.3 51.1% 53.5% (many diffs)
63 mouse 21413 Tcf4 transcription factor 4 XM_006525752.3 51.1% 53.5% (many diffs)
64 mouse 21413 Tcf4 transcription factor 4 XM_017317858.1 51% 53.3% (many diffs)
65 mouse 21413 Tcf4 transcription factor 4 NM_013685.2 51% 53.3% (many diffs)
66 mouse 21413 Tcf4 transcription factor 4 XM_006525746.3 51% 53.3% (many diffs)
67 mouse 21413 Tcf4 transcription factor 4 XM_006525747.3 51% 53.3% (many diffs)
68 mouse 21413 Tcf4 transcription factor 4 XM_006525748.3 50.8% 53.2% (many diffs)
69 mouse 21413 Tcf4 transcription factor 4 XM_006525749.3 50.8% 53.2% (many diffs)
70 mouse 21413 Tcf4 transcription factor 4 XM_017317854.1 50.8% 53.2% (many diffs)
71 mouse 21413 Tcf4 transcription factor 4 XM_017317855.1 50.8% 53.2% (many diffs)
72 mouse 21413 Tcf4 transcription factor 4 XM_017317856.1 50.7% 53% (many diffs)
73 mouse 21413 Tcf4 transcription factor 4 XM_006525753.3 47.4% 49.7% (many diffs)
74 mouse 21413 Tcf4 transcription factor 4 XM_017317859.1 47.2% 49.6% (many diffs)
75 mouse 21413 Tcf4 transcription factor 4 XM_017317861.1 32.6% 34.6% (many diffs)
76 mouse 21413 Tcf4 transcription factor 4 XM_006525757.3 32.4% 34.4% (many diffs)
77 mouse 21413 Tcf4 transcription factor 4 XM_006525759.3 32.4% 34.4% (many diffs)
78 mouse 21413 Tcf4 transcription factor 4 XM_017317860.1 32.4% 34.4% (many diffs)
79 mouse 21413 Tcf4 transcription factor 4 XM_017317863.1 32.4% 34.4% (many diffs)
80 mouse 21413 Tcf4 transcription factor 4 XM_006525762.3 27.8% 26.7% (many diffs)
81 mouse 21413 Tcf4 transcription factor 4 XM_006525760.3 27.6% 26.5% (many diffs)
82 mouse 21413 Tcf4 transcription factor 4 XM_006525766.3 27.5% 26.4% (many diffs)
83 mouse 21413 Tcf4 transcription factor 4 XM_006525763.3 27.2% 27.1% (many diffs)
84 mouse 21413 Tcf4 transcription factor 4 XM_006525761.3 27% 26.9% (many diffs)
85 mouse 21413 Tcf4 transcription factor 4 XM_017317862.1 20.4% 22% (many diffs)
86 mouse 21413 Tcf4 transcription factor 4 XM_006525764.3 20.3% 21.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA TCACCAACAG CGAATGGCTG CCTTAGGGAC GGACAAAGAG CTGAGTGATT
121TACTGGATTT CAGTGCGATG TTTTCACCTC CTGTGAGCAG TGGGAAAAAT GGACCAACTT
181CTTTGGCAAG TGGACATTTT ACTGGCTCAA ATGTAGAAGA CAGAAGTAGC TCAGGGTCCT
241GGGGGAATGG AGGACATCCA AGCCCGTCCA GGAACTATGG AGATGGGACT CCCTATGACC
301ACATGACCAG CAGGGACCTT GGGTCACATG ACAATCTCTC TCCACCTTTT GTCAATTCCA
361GAATACAAAG TAAAACAGAA AGGGGCTCAT ACTCATCTTA TGGGAGAGAA TCAAACTTAC
421AGGGTTGCCA CCAGCAGAGT CTCCTTGGAG GTGACATGGA TATGGGCAAC CCAGGAACCC
481TTTCGCCCAC CAAACCTGGT TCCCAGTACT ATCAGTATTC TAGCAATAAT CCCCGAAGGA
541GGCCTCTTCA CAGTAGTGCC ATGGAGGTAC AGACAAAGAA AGTTCGAAAA GTTCCTCCAG
601GTTTGCCATC TTCAGTCTAT GCTCCATCAG CAAGCACTGC CGACTACAAT AGGGACTCGC
661CAGGCTATCC TTCCTCCAAA CCAGCAACCA GCACTTTCCC TAGCTCCTTC TTCATGCAAG
721ATGGCCATCA CAGCAGTGAC CCTTGGAGCT CCTCCAGTGG GATGAATCAG CCTGGCTATG
781CAGGAATGTT GGGCAACTCT TCTCATATTC CACAGTCCAG CAGCTACTGT AGCCTGCATC
841CACATGAACG TTTGAGCTAT CCATCACACT CCTCAGCAGA CATCAATTCC AGTCTTCCTC
901CGATGTCCAC TTTCCATCGT AGTGGTACAA ACCATTACAG CACCTCTTCC TGTACGCCTC
961CTGCCAACGG GACAGACAGT ATAATGGCAA ATAGAGGAAG CGGGGCAGCC GGCAGCTCCC
1021AGACTGGAGA TGCTCTGGGG AAAGCACTTG CTTCGATCTA TTCTCCAGAT CACACTAACA
1081ACAGCTTTTC ATCAAACCCT TCAACTCCTG TTGGCTCTCC TCCATCTCTC TCAGCAGGCA
1141CAGCTGTTTG GTCTAGAAAT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1201attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)