Construct: ORF ccsbBroadEn_11201

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004485.1_s300c1, BRDN0000390669
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR2C2 (7182)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7182 NR2C2 nuclear receptor subfamily ... NM_003298.5 85.6% 83.8% (many diffs)
2 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534064.3 85.6% 83.8% (many diffs)
3 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534065.3 85.6% 83.8% (many diffs)
4 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534066.3 85.6% 83.8% (many diffs)
5 human 7182 NR2C2 nuclear receptor subfamily ... NM_001291694.2 82.6% 80.8% (many diffs)
6 human 7182 NR2C2 nuclear receptor subfamily ... XM_017007120.1 82.6% 80.8% (many diffs)
7 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534058.3 81.3% 79.6% (many diffs)
8 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534059.2 81.3% 79.6% (many diffs)
9 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534061.3 81.3% 79.6% (many diffs)
10 human 7182 NR2C2 nuclear receptor subfamily ... XM_017007118.2 81.3% 79.6% (many diffs)
11 human 7182 NR2C2 nuclear receptor subfamily ... XM_017007119.1 81.3% 79.6% (many diffs)
12 human 7182 NR2C2 nuclear receptor subfamily ... XM_011534063.3 78.3% 76.7% (many diffs)
13 human 7182 NR2C2 nuclear receptor subfamily ... XM_024453739.1 53.5% 52.1% (many diffs)
14 mouse 22026 Nr2c2 nuclear receptor subfamily ... NM_011630.3 76.6% 79.3% (many diffs)
15 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_006505904.3 76.6% 79.3% (many diffs)
16 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_006505905.3 76.6% 79.3% (many diffs)
17 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_006505906.3 76.6% 79.3% (many diffs)
18 mouse 22026 Nr2c2 nuclear receptor subfamily ... NM_001347342.1 72.7% 75.3% (many diffs)
19 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_006505902.2 72.7% 75.3% (many diffs)
20 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_017321517.1 49.8% 51.2% (many diffs)
21 mouse 22026 Nr2c2 nuclear receptor subfamily ... XM_017321518.1 49.8% 51.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1656
ORF length:
1590
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CAGCCCCTCC CCACGCATCC AGATAATCTC CACCGACTCT GCTGTAGCCT
121CACCTCAGCG CATTCAGGGC TCTGAACCTG CCTCTGGCCC ATTGAGTGTT TTCACATCTT
181TGAACAAAGA GAAGATTGTC ACAGACCAGC AGACAGGACA GAAAATCCAG ATAGTCACCG
241CAGTGGACGC CTCCGGATCC CCCAAACAGC AGTTCACCCT GACCAGCCCA GATGGAGCTG
301GAACTGGGAA GGTGATCCTG GCTTCCCCAG AGACATCCAG CGCCAAGCAA CTCATATTCA
361CCACCTCAGA CAACCTCGTC CCTGGCAGGA TCCAGATTGT CACGGATTCT GCCTCTGTGG
421AGCGTTTACT GGGGAAGACG GACGTCCAGC GGCCCCAGGT GGTAGAGTAC TGTGTGGTCT
481GTGGCGACAA AGCCTCCGGC CGTCACTATG GGGCTGTCAG TTGTGAAGGT TGCAAAGGTT
541TCTTCAAAAG GAGTGTGAGG AAAAATTTGA CCTACAGCTG CCGGAGCAAC CAAGACTGCA
601TCATCAATAA ACATCACCGG AACCGCTGTC AGTTTTGCCG GCTGAAAAAA TGCTTAGAGA
661TGGGCATGAA AATGGAATCT GTGCAGAGTA AACGGAAGCC CTTCGATGTG CAACGGGAGA
721AACCAAGCAA TTGTGCTGCT TCAACTGAGA AAATCTATAT CCGGAAAGAC CTGAGAAGTC
781CCCTGATAGC TACTCCCACG TTTGTGGCAG ACAAAGATGG AGCAAGACAA ACAGGTCTTC
841TTGATCCAGG GATGCTTGTG AACATCCAGC AGCCTTTGAT ACGTGAGGAT GGTACAGTTC
901TCCTGGCCAC GGATTCTAAG GCTGAAACAA GCCAGGGAGC TCTGGGCACA CTGGCAAATG
961TAGTGACCTC CCTTGCCAAC CTAAGTGAAT CTTTGAACAA CGGTGACACT TCAGAAATCC
1021AGCCAGAGGA CCAGTCTGCA AGTGAGATAA CTCGGGCATT TGATACCTTA GCTAAAGCAC
1081TTAATACCAC AGACAGCTCC TCTTCTCCAA GCTTGGCAGA TGGGATAGAC ACCAGTGGAG
1141GAGGGAGCAT CCACGTCATC AGCAGAGACC AGTCGACACC CATCATTGAG GTTGAAGGCC
1201CCCTCCTTTC AGACACACAC GTCACATTTA AGCTAACAAT GCCCAGTCCA ATGCCAGAGT
1261ACCTCAACGT GCACTACATC TGTGAGTCTG CATCCCGTCT GCTTTTCCTC TCAATGCACT
1321GGGCTCGGTC AATCCCAGCC TTTCAGGCAC TTGGGCAGGA CTGCAACACC AGCCTTGTGC
1381GGGCCTGCTG GAATGAGCTC TTCACCCTCG GCCTGGCCCA GTGTGCCCAG GTCATGAGTC
1441TCTCCACCAT CCTGGCTGCC ATTGTCAACC ACCTGCAGAA CAGCATCCAG GAAGATAAAC
1501TTTCTGGTGA CCGGATAAAG CAAGTCATGG AGCACATCTG GAAGCTGCAG GAGTTCTGTA
1561ACAGCATGGC GAAGCTGGAT ATAGATGGCT ATGAGTATGC ATACCTTAAA GCTATAGTTC
1621TCTTTAGCCC CGGTAAGATA TGCGGTGGGG ATGCATGCCC AACTTTCTTG TACAAAGTtg
1681gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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