Transcript: Mouse XM_006505902.2

PREDICTED: Mus musculus nuclear receptor subfamily 2, group C, member 2 (Nr2c2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nr2c2 (22026)
Length:
7427
CDS:
113..2002

Additional Resources:

NCBI RefSeq record:
XM_006505902.2
NBCI Gene record:
Nr2c2 (22026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346312 GCATGGCGAAACTGGATATAG pLKO_005 1653 CDS 100% 13.200 18.480 N Nr2c2 n/a
2 TRCN0000346254 TATGAGTACGCATACCTTAAA pLKO_005 1679 CDS 100% 13.200 18.480 N Nr2c2 n/a
3 TRCN0000222369 CCTCAGCGCATTCAGATTGTA pLKO.1 269 CDS 100% 5.625 7.875 N Nr2c2 n/a
4 TRCN0000222368 CCTGAGTGAATCTTTGAACAA pLKO.1 1069 CDS 100% 4.950 6.930 N Nr2c2 n/a
5 TRCN0000346253 CCTGAGTGAATCTTTGAACAA pLKO_005 1069 CDS 100% 4.950 6.930 N Nr2c2 n/a
6 TRCN0000346257 AGTGCCAAGCAGCTCATATTC pLKO_005 428 CDS 100% 13.200 9.240 N Nr2c2 n/a
7 TRCN0000346256 TCCCAGACAATAGCAACTAAA pLKO_005 2129 3UTR 100% 13.200 9.240 N Nr2c2 n/a
8 TRCN0000222367 CCAACATAACAGAAGAACTTT pLKO.1 1875 CDS 100% 5.625 3.938 N Nr2c2 n/a
9 TRCN0000222370 GCTATGAGTACGCATACCTTA pLKO.1 1677 CDS 100% 4.950 3.465 N Nr2c2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489922 GTAGTTGACTTTACAATATGTATT pLX_317 22.8% 90% 95.2% V5 (not translated due to prior stop codon) (many diffs) n/a
2 TRCN0000489583 GCTATTGACAGTTTAGAGAGAGTT pLX_317 19.4% 90% 95.2% V5 (many diffs) n/a
3 TRCN0000489859 GAATTCCCAACAAACTGACATGCA pLX_317 24% 85.1% 90.4% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000491841 CCGTAGACTGTAACGTTAATAGGG pLX_317 20.9% 85% 90.4% V5 (many diffs) n/a
5 ccsbBroadEn_11201 pDONR223 100% 72.7% 75.3% None (many diffs) n/a
6 ccsbBroad304_11201 pLX_304 0% 72.7% 75.3% V5 (many diffs) n/a
7 TRCN0000466070 CGATGCCGCGCTCGGGAAGCGGAT pLX_317 20.7% 72.7% 75.3% V5 (many diffs) n/a
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