Transcript: Human XM_011534063.3

PREDICTED: Homo sapiens nuclear receptor subfamily 2 group C member 2 (NR2C2), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NR2C2 (7182)
Length:
8383
CDS:
233..2122

Additional Resources:

NCBI RefSeq record:
XM_011534063.3
NBCI Gene record:
NR2C2 (7182)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011534063.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245174 AGGGTGACATTTCCGTATATT pLKO_005 6458 3UTR 100% 15.000 21.000 N NR2C2 n/a
2 TRCN0000245171 GCATGGCGAAGCTGGATATAG pLKO_005 1773 CDS 100% 13.200 18.480 N NR2C2 n/a
3 TRCN0000021654 CGTCACATTTAAGCTAACAAT pLKO.1 1429 CDS 100% 5.625 7.875 N NR2C2 n/a
4 TRCN0000021657 GCTATGAGTATGCATACCTTA pLKO.1 1797 CDS 100% 4.950 6.930 N NR2C2 n/a
5 TRCN0000245170 CCAGCGCCAAGCAACTCATAT pLKO_005 546 CDS 100% 13.200 9.240 N NR2C2 n/a
6 TRCN0000245173 GGCTGATGAGCTCCAACATAA pLKO_005 1983 CDS 100% 13.200 9.240 N NR2C2 n/a
7 TRCN0000245172 TATGAGTATGCATACCTTAAA pLKO_005 1799 CDS 100% 13.200 9.240 N NR2C2 n/a
8 TRCN0000222367 CCAACATAACAGAAGAACTTT pLKO.1 1995 CDS 100% 5.625 3.938 N Nr2c2 n/a
9 TRCN0000021658 CCAGCACAAGCCAGATTGAAA pLKO.1 1857 CDS 100% 5.625 3.938 N NR2C2 n/a
10 TRCN0000021655 CCACGGATTCTAAGGCTGAAA pLKO.1 1116 CDS 100% 4.950 3.465 N NR2C2 n/a
11 TRCN0000021656 CCTAAGTGAATCTTTGAACAA pLKO.1 1189 CDS 100% 4.950 3.465 N NR2C2 n/a
12 TRCN0000222369 CCTCAGCGCATTCAGATTGTA pLKO.1 389 CDS 100% 5.625 3.938 N Nr2c2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011534063.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489922 GTAGTTGACTTTACAATATGTATT pLX_317 22.8% 97% 97% V5 (not translated due to prior stop codon) 169_170ins57;732C>T n/a
2 TRCN0000489583 GCTATTGACAGTTTAGAGAGAGTT pLX_317 19.4% 96.9% 97% V5 169_170ins57;1886_1887delTA n/a
3 TRCN0000489859 GAATTCCCAACAAACTGACATGCA pLX_317 24% 91.9% 91.9% V5 (not translated due to prior stop codon) 1_99del;169_170ins57 n/a
4 TRCN0000491841 CCGTAGACTGTAACGTTAATAGGG pLX_317 20.9% 91.8% 91.9% V5 1_99del;169_170ins57;1886_1887delTA n/a
5 ccsbBroadEn_11201 pDONR223 100% 78.3% 76.7% None (many diffs) n/a
6 ccsbBroad304_11201 pLX_304 0% 78.3% 76.7% V5 (many diffs) n/a
7 TRCN0000466070 CGATGCCGCGCTCGGGAAGCGGAT pLX_317 20.7% 78.3% 76.7% V5 (many diffs) n/a
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