Transcript: Human XM_011534059.2

PREDICTED: Homo sapiens nuclear receptor subfamily 2 group C member 2 (NR2C2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NR2C2 (7182)
Length:
9349
CDS:
1205..3151

Additional Resources:

NCBI RefSeq record:
XM_011534059.2
NBCI Gene record:
NR2C2 (7182)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011534059.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245174 AGGGTGACATTTCCGTATATT pLKO_005 7487 3UTR 100% 15.000 21.000 N NR2C2 n/a
2 TRCN0000245171 GCATGGCGAAGCTGGATATAG pLKO_005 2802 CDS 100% 13.200 18.480 N NR2C2 n/a
3 TRCN0000021654 CGTCACATTTAAGCTAACAAT pLKO.1 2458 CDS 100% 5.625 7.875 N NR2C2 n/a
4 TRCN0000021657 GCTATGAGTATGCATACCTTA pLKO.1 2826 CDS 100% 4.950 6.930 N NR2C2 n/a
5 TRCN0000245170 CCAGCGCCAAGCAACTCATAT pLKO_005 1575 CDS 100% 13.200 9.240 N NR2C2 n/a
6 TRCN0000245173 GGCTGATGAGCTCCAACATAA pLKO_005 3012 CDS 100% 13.200 9.240 N NR2C2 n/a
7 TRCN0000245172 TATGAGTATGCATACCTTAAA pLKO_005 2828 CDS 100% 13.200 9.240 N NR2C2 n/a
8 TRCN0000222367 CCAACATAACAGAAGAACTTT pLKO.1 3024 CDS 100% 5.625 3.938 N Nr2c2 n/a
9 TRCN0000021658 CCAGCACAAGCCAGATTGAAA pLKO.1 2886 CDS 100% 5.625 3.938 N NR2C2 n/a
10 TRCN0000021655 CCACGGATTCTAAGGCTGAAA pLKO.1 2145 CDS 100% 4.950 3.465 N NR2C2 n/a
11 TRCN0000021656 CCTAAGTGAATCTTTGAACAA pLKO.1 2218 CDS 100% 4.950 3.465 N NR2C2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011534059.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489922 GTAGTTGACTTTACAATATGTATT pLX_317 22.8% 99.9% 100% V5 (not translated due to prior stop codon) 789C>T n/a
2 TRCN0000489583 GCTATTGACAGTTTAGAGAGAGTT pLX_317 19.4% 99.8% 100% V5 1943_1944delTA n/a
3 TRCN0000489859 GAATTCCCAACAAACTGACATGCA pLX_317 24% 94.9% 94.9% V5 (not translated due to prior stop codon) 1_99del n/a
4 TRCN0000491841 CCGTAGACTGTAACGTTAATAGGG pLX_317 20.9% 94.8% 94.9% V5 1_99del;1943_1944delTA n/a
5 ccsbBroadEn_11201 pDONR223 100% 81.3% 79.6% None (many diffs) n/a
6 ccsbBroad304_11201 pLX_304 0% 81.3% 79.6% V5 (many diffs) n/a
7 TRCN0000466070 CGATGCCGCGCTCGGGAAGCGGAT pLX_317 20.7% 81.3% 79.6% V5 (many diffs) n/a
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