Construct: ORF ccsbBroadEn_11252
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015886.1_s300c1, BRDN0000395908
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STAM (8027)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8027 | STAM | signal transducing adaptor ... | XM_011519695.3 | 80.8% | 79.3% | 799G>T;1167_1312del;1356_1494del |
| 2 | human | 8027 | STAM | signal transducing adaptor ... | NM_003473.4 | 74.5% | 73.1% | 799G>T;1167_1312del;1356_1620del |
| 3 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324282.2 | 68.6% | 67.2% | (many diffs) |
| 4 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324283.2 | 65.3% | 63.8% | (many diffs) |
| 5 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324284.2 | 65.3% | 63.8% | (many diffs) |
| 6 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324285.2 | 65.3% | 63.8% | (many diffs) |
| 7 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324286.2 | 56.6% | 54.8% | (many diffs) |
| 8 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324287.2 | 54% | 52.5% | (many diffs) |
| 9 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324288.2 | 48.9% | 46.2% | (many diffs) |
| 10 | human | 8027 | STAM | signal transducing adaptor ... | NM_001324289.2 | 48.9% | 46.2% | (many diffs) |
| 11 | human | 8027 | STAM | signal transducing adaptor ... | XM_017016685.2 | 48.9% | 46.2% | (many diffs) |
| 12 | mouse | 20844 | Stam | signal transducing adaptor ... | NM_011484.2 | 66.2% | 69.3% | (many diffs) |
| 13 | mouse | 20844 | Stam | signal transducing adaptor ... | XM_017316829.1 | 58% | 60.4% | (many diffs) |
| 14 | mouse | 20844 | Stam | signal transducing adaptor ... | XR_373935.3 | 50% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1275
- ORF length:
- 1209
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TCTTTTTGCC ACCAATCCCT TCGATCAGGA TGTTGAGAAA GCAACCAGCG 121 AGATGAATAC TGCTGAGGAC TGGGGCCTCA TTTTGGATAT CTGTGATAAA GTTGGTCAGT 181 CTCGCACTGG ACCTAAGGAT TGTCTTCGGT CTATTATGAG AAGAGTGAAC CACAAAGATC 241 CTCACGTTGC TATGCAGGCT TTGACTCTTC TAGGAGCATG TGTATCAAAC TGTGGCAAAA 301 TTTTTCATTT AGAAGTATGT TCAAGAGATT TTGCTAGTGA AGTAAGCAAC GTATTAAATA 361 AGGGTCATCC TAAAGTATGT GAAAAATTAA AGGCTCTTAT GGTTGAATGG ACAGATGAAT 421 TTAAGAATGA TCCACAGCTT AGTCTAATAT CAGCAATGAT TAAGAACCTT AAGGAACAAG 481 GAGTTACGTT CCCAGCTATT GGCTCTCAGG CTGCAGAACA AGCAAAAGCA AGCCCAGCTC 541 TTGTAGCCAA GGATCCTGGT ACTGTGGCTA ACAAAAAAGA AGAAGAAGAT TTAGCAAAAG 601 CCATTGAGTT GTCTCTCAAG GAACAAAGGC AGCAGTCAAC CACCCTTTCC ACTTTGTATC 661 CAAGCACATC CAGTCTCTTA ACTAACCACC AACATGAAGG CCGAAAAGTT CGTGCTATAT 721 ATGACTTTGA AGCTGCTGAA GACAATGAAC TTACTTTTAA AGCTGGAGAA ATTATTACAG 781 TTCTTGATGA CAGTGATCCT AACTGGTGGA AAGGTGAAAC CCATCAAGGC ATAGGGTTAT 841 TTCCTTCTAA TTTTGTGACT GCATATCTCA CTGCTGAACC AGAAATGATT AAAACAGAGA 901 AGAAGACGGT ACAATTTAGT GATGATGTTC AGGTAGAGAC AATAGAACCA GAGCCGGAAC 961 CAGCCTTTAT TGATGAAGAT AAAATGGACC AGTTGCTACA GATGCTGCAA AGTACAGACC 1021 CCAGTGATGA TCAGCCAGAC CTACCAGAGC TGCTTCATCT TGAAGCAATG TGTCACCAGA 1081 TGGGACCTCT CATTGATGAA AAGCTGGAAG ATATTGATAG AAAACATTCA GAACTCTCAG 1141 AACTTAATGT GAAAGTGATG GAGGCCCTTT CCTTATATAC CAAGTTAATG AACGAAGATC 1201 CGATGTATTC CATGTATGCA AAGTTACAGA ATCAGCCAGG CAGTGGTCCC ACCATCCGCA 1261 AACCCAGCCC TTCCTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1321 tatcaatttg ttgcaacgaa c