Construct: ORF ccsbBroadEn_11354

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010389.1_s300c1, BRDN0000397812
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDLIM7 (9260)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9260 PDLIM7 PDZ and LIM domain 7 NM_213636.2 85.7% 85.1% 413C>A;573_666delinsC
2 human 9260 PDLIM7 PDZ and LIM domain 7 NM_005451.5 41.7% 41.5% 413C>A;574_1371del
3 human 9260 PDLIM7 PDZ and LIM domain 7 NM_203352.3 34% 33% (many diffs)
4 human 9260 PDLIM7 PDZ and LIM domain 7 NR_103804.2 29.9% 1_88del;501C>A;662_1911del
5 mouse 67399 Pdlim7 PDZ and LIM domain 7 NM_001114087.2 75.4% 79.2% (many diffs)
6 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_006517349.1 65.8% 65.8% (many diffs)
7 mouse 67399 Pdlim7 PDZ and LIM domain 7 NM_026131.4 62.4% 64.8% (many diffs)
8 mouse 67399 Pdlim7 PDZ and LIM domain 7 NR_104287.1 48.7% (many diffs)
9 mouse 67399 Pdlim7 PDZ and LIM domain 7 NM_001114088.2 36.7% 38.7% (many diffs)
10 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_006517344.3 30.4% 31.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
639
ORF length:
573
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TTCCTTCAAA GTAGTGCTGG AGGGGCCAGC ACCTTGGGGC TTCCGGCTGC
121AAGGGGGCAA GGACTTCAAT GTGCCCCTCT CCATTTCCCG GCTCACTCCT GGGGGCAAAG
181CGGCGCAGGC CGGAGTGGCC GTGGGTGACT GGGTGCTGAG CATCGATGGC GAGAATGCGG
241GTAGCCTCAC ACACATCGAA GCTCAGAACA AGATCCGGGC CTGCGGGGAG CGCCTCAGCC
301TGGGCCTCAG CAGGGCCCAG CCGGTTCAGA GCAAACCGCA GAAGGCCTCC GCCCCCGCCG
361CGGACCCTCC GCGGTACACC TTTGCACCCA GCGTCTCCCT CAACAAGACG GCCCGGCCCT
421TTGGGGCGCC CCCGCCCGCT GACAGCGCCC CGCAGCAGAA TGGACAGCCG CTCCGACAGC
481TGGTCCCAGA TGCCAGCAAG CAGCGGCTGA TGGAGAACAC AGAGGACTGG CGGCCGCGGC
541CGGGGACAGG CCAGTCGCGT TCCTTCCGCA TCCTTGCCCA CCTCACAGGC ACCGAGTTCA
601TGCAAGACCC GGATGAGGAG CACCTGAAGA AATCAAGCTA CCCAACTTTC TTGTACAAAG
661Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)