Transcript: Mouse NR_104287.1

Mus musculus PDZ and LIM domain 7 (Pdlim7), transcript variant d, non-coding RNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Pdlim7 (67399)
Length:
1031
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104287.1
NBCI Gene record:
Pdlim7 (67399)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_104287.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000322470 GGAGACTGGGTACTGAATATT pLKO_005 230 3UTR 100% 15.000 12.000 N Pdlim7 n/a
2 TRCN0000375191 GTTCATGCAAGACCCGGATGA pLKO_005 639 3UTR 100% 4.050 3.240 N Pdlim7 n/a
3 TRCN0000178443 GCCTTTGAGCATGGAAATAAA pLKO.1 995 3UTR 100% 15.000 10.500 N Pdlim7 n/a
4 TRCN0000322543 TGCCTTTGAGCATGGAAATAA pLKO_005 994 3UTR 100% 15.000 10.500 N Pdlim7 n/a
5 TRCN0000322545 AGCTACAGAGCCCACGCTATA pLKO_005 698 3UTR 100% 10.800 7.560 N Pdlim7 n/a
6 TRCN0000200458 GCTCTTGCCTACCACTTTCAT pLKO.1 853 3UTR 100% 5.625 3.938 N Pdlim7 n/a
7 TRCN0000200375 GCAGACCTCTGACAAACAGTT pLKO.1 492 3UTR 100% 4.950 3.465 N Pdlim7 n/a
8 TRCN0000375260 TCTTGGCCCTGTGGTACTACT pLKO_005 956 3UTR 100% 4.950 3.465 N Pdlim7 n/a
9 TRCN0000182783 CAGACCTCTGACAAACAGTTG pLKO.1 493 3UTR 100% 4.050 2.835 N Pdlim7 n/a
10 TRCN0000375190 CTGATGGAGGATACCGAAGAC pLKO_005 550 3UTR 100% 4.050 2.835 N Pdlim7 n/a
11 TRCN0000181680 CTCTGCTTCCTTTCTCTGTTA pLKO.1 801 3UTR 100% 4.950 2.970 N Pdlim7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104287.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02126 pDONR223 100% 57.2% None (many diffs) n/a
2 ccsbBroad304_02126 pLX_304 0% 57.2% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000466330 TCACCGTCTCGAGAAGACCACTGA pLX_317 54.5% 57.2% V5 (not translated due to frame shift) (many diffs) n/a
4 ccsbBroadEn_11354 pDONR223 100% 48.7% None (many diffs) n/a
5 ccsbBroad304_11354 pLX_304 0% 48.7% V5 (many diffs) n/a
6 TRCN0000472937 ACAAGGGCGCAACGTACTCCCCAT pLX_317 57.8% 48.7% V5 (many diffs) n/a
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