Construct: ORF ccsbBroadEn_11393

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003639.1_s300c1, BRDN0000387072
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CREB5 (9586)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9586 CREB5 cAMP responsive element bin... NM_001011666.3 90.5% 90.5% 1_105del
2 human 9586 CREB5 cAMP responsive element bin... XM_017012810.1 76% 75.8% 1_105del;947A>G;948_949ins159
3 human 9586 CREB5 cAMP responsive element bin... NM_182899.4 70.3% 70.3% 1_423del
4 human 9586 CREB5 cAMP responsive element bin... XM_024447005.1 70.3% 70.3% 1_423del
5 human 9586 CREB5 cAMP responsive element bin... NM_004904.3 66.6% 66.6% 1_501del
6 human 9586 CREB5 cAMP responsive element bin... XM_005249906.1 66.6% 66.6% 1_501del
7 human 9586 CREB5 cAMP responsive element bin... XM_017012806.1 66.6% 66.6% 1_501del
8 human 9586 CREB5 cAMP responsive element bin... NM_182898.4 65.7% 65.7% 1_522del
9 human 9586 CREB5 cAMP responsive element bin... XM_017012808.1 65.7% 65.7% 1_522del
10 human 9586 CREB5 cAMP responsive element bin... XM_017012807.1 62.1% 62.1% 1_609del
11 human 9586 CREB5 cAMP responsive element bin... XM_017012809.1 56% 55.8% 1_501del;1343A>G;1344_1345ins159
12 human 9586 CREB5 cAMP responsive element bin... XR_001744893.2 12.6% 1_294del;1297_7914del
13 mouse 231991 Creb5 cAMP responsive element bin... NM_172728.2 85.1% 92.4% (many diffs)
14 mouse 231991 Creb5 cAMP responsive element bin... XM_011241296.1 75.2% 81.1% (many diffs)
15 mouse 231991 Creb5 cAMP responsive element bin... XM_017321523.1 64% 69.4% (many diffs)
16 mouse 231991 Creb5 cAMP responsive element bin... NM_001327821.1 60.6% 65.8% (many diffs)
17 mouse 231991 Creb5 cAMP responsive element bin... XM_017321522.1 60.6% 65.8% (many diffs)
18 mouse 231991 Creb5 cAMP responsive element bin... XM_017321521.1 59.8% 64.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1068
ORF length:
1002
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC AGCCTCCATG CCTGGGACCC TGCCCAACCC TACAATGCCA GGATCTTCCG
121CCGTCTTGAT GCCAATGGAG CGACAAATGT CAGTGAACTC CAGCATCATG GGGATGCAAG
181GTCCAAATCT CAGCAACCCC TGTGCTTCTC CCCAGGTCCA GCCAATGCAT TCAGAAGCCA
241AAATGAGGTT GAAGGCTGCA TTGACTCACC ACCCTGCTGC CATGTCAAAT GGGAACATGA
301ACACCATGGG ACACATGATG GAGATGATGG GCTCCCGGCA GGACCAGACG CCACACCATC
361ACATGCACTC GCACCCGCAT CAGCACCAGA CACTGCCACC CCATCACCCT TACCCACACC
421AGCACCAGCA CCCAGCACAC CATCCTCACC CTCAACCCCA TCACCAGCAG AACCATCCAC
481ATCACCACTC CCATTCCCAC CTTCATGCAC ACCCAGCACA TCACCAGACC TCGCCACATC
541CGCCCCTGCA CACCGGCAAC CAAGCACAGG TTTCACCAGC AACACAACAG ATGCAGCCAA
601CCCAGACAAT ACAGCCACCC CAGCCCACAG GGGGGCGCCG GCGAAGGGTG GTAGACGAGG
661ATCCGGACGA GAGGCGGCGG AAATTTCTGG AACGGAACCG GGCAGCTGCC ACCCGCTGCA
721GACAGAAGAG GAAGGTCTGG GTGATGTCAT TGGAAAAGAA AGCAGAAGAA CTCACCCAGA
781CAAACATGCA GCTTCAGAAT GAAGTGTCTA TGTTGAAAAA TGAGGTGGCC CAGCTGAAAC
841AGTTGTTGTT AACACATAAA GACTGCCCAA TAACAGCCAT GCAGAAAGAA TCACAAGGAT
901ATCTAAGTCC AGAGAGTAGC CCTCCTGCTA GTCCTGTCCC AGCTTGCTCC CAGCAACAAG
961TCATCCAGCA TAATACCATC ACTACTTCCT CATCGGTCAG CGAGGTGGTA GGAAGCTCCA
1021CCCTCAGCCA GCTCACCACT CACAGAACAG ACCTGAATCC GATTCTTTAC CCAACTTTCT
1081TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)