Transcript: Human XM_017012810.1

PREDICTED: Homo sapiens cAMP responsive element binding protein 5 (CREB5), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CREB5 (9586)
Length:
2525
CDS:
48..998

Additional Resources:

NCBI RefSeq record:
XM_017012810.1
NBCI Gene record:
CREB5 (9586)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017012810.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271310 AGACCTGAATCCGATTCTTTA pLKO_005 1165 3UTR 100% 13.200 9.240 N CREB5 n/a
2 TRCN0000271247 GATGCCAATGGAGCGACAAAT pLKO_005 215 CDS 100% 13.200 9.240 N CREB5 n/a
3 TRCN0000013485 GCCATGCAGAAAGAATCACAA pLKO.1 963 CDS 100% 4.950 3.465 N CREB5 n/a
4 TRCN0000013483 CCAGATAAACACACAGCCTTT pLKO.1 1654 3UTR 100% 4.050 2.835 N CREB5 n/a
5 TRCN0000271249 AGCTGAAACAGTTGTTGTTAA pLKO_005 919 CDS 100% 13.200 7.920 N CREB5 n/a
6 TRCN0000013487 GCAACAAGTCATCCAGCATAA pLKO.1 1069 3UTR 100% 10.800 6.480 N CREB5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017012810.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11393 pDONR223 100% 76% 75.8% None 1_105del;947A>G;948_949ins159 n/a
2 ccsbBroad304_11393 pLX_304 0% 76% 75.8% V5 1_105del;947A>G;948_949ins159 n/a
3 TRCN0000469202 ATTCAGAAACACATTAAATCAATT pLX_317 48% 76% 75.8% V5 1_105del;947A>G;948_949ins159 n/a
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