Transcript: Human XM_024451308.1

PREDICTED: Homo sapiens SURP and G-patch domain containing 2 (SUGP2), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SUGP2 (10147)
Length:
6783
CDS:
15..3305

Additional Resources:

NCBI RefSeq record:
XM_024451308.1
NBCI Gene record:
SUGP2 (10147)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024451308.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236400 GGCCTGAGAAGTGACGTATTT pLKO_005 291 CDS 100% 13.200 18.480 N SUGP2 n/a
2 TRCN0000153826 CGTGAATCGTATTACTCCCAA pLKO.1 827 CDS 100% 2.640 3.696 N SUGP2 n/a
3 TRCN0000153203 CCTCCTACGAAACCTGAAATT pLKO.1 1734 CDS 100% 13.200 9.240 N SUGP2 n/a
4 TRCN0000236401 GAGAAGGAGAGTCGGGATTAT pLKO_005 609 CDS 100% 13.200 9.240 N SUGP2 n/a
5 TRCN0000236403 GGTCATTGGCCACCGGAAATT pLKO_005 419 CDS 100% 13.200 9.240 N SUGP2 n/a
6 TRCN0000153153 GAGTGTCACACCTTTGCTTAT pLKO.1 1370 CDS 100% 10.800 7.560 N SUGP2 n/a
7 TRCN0000152597 GTCATTGAAGGTTGGCATGAT pLKO.1 2924 CDS 100% 4.950 3.465 N SUGP2 n/a
8 TRCN0000156277 CTTTGGATCTTCCAGGCTGAT pLKO.1 572 CDS 100% 4.050 2.835 N SUGP2 n/a
9 TRCN0000153979 CAAGTCATTGAAGGTTGGCAT pLKO.1 2921 CDS 100% 2.640 1.848 N SUGP2 n/a
10 TRCN0000157731 CCTTCAGATCAAGCAACCCTT pLKO.1 322 CDS 100% 2.640 1.848 N SUGP2 n/a
11 TRCN0000236402 TACCCACCGTGAATCGTATTA pLKO_005 820 CDS 100% 0.000 0.000 N SUGP2 n/a
12 TRCN0000236404 TTACTGTCTCTGGCTTGTTTC pLKO_005 6586 3UTR 100% 10.800 6.480 N SUGP2 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 5040 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 5417 3UTR 100% 4.950 2.475 Y ORAI2 n/a
15 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 5414 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024451308.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11459 pDONR223 100% 86.4% 84.7% None (many diffs) n/a
2 ccsbBroad304_11459 pLX_304 0% 86.4% 84.7% V5 (many diffs) n/a
3 TRCN0000477262 TGGCATAAAACTGAAAAGAGTGAG pLX_317 13.8% 86.4% 84.7% V5 (many diffs) n/a
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