Construct: ORF ccsbBroadEn_11488

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014270.1_s300c1, BRDN0000390615
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABCA8 (10351)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10351 ABCA8 ATP binding cassette subfam... XM_011524192.3 25% 25% 799_3189del
2 human 10351 ABCA8 ATP binding cassette subfam... NM_007168.4 16.8% 16.8% 799_4743del
3 human 10351 ABCA8 ATP binding cassette subfam... NM_001288986.1 16.4% 16.4% 799_4848del
4 human 10351 ABCA8 ATP binding cassette subfam... NM_001288985.2 16.4% 16.4% 799_4863del
5 human 10351 ABCA8 ATP binding cassette subfam... XR_002957944.1 13.5% 1_171del;970_5910del
6 human 10351 ABCA8 ATP binding cassette subfam... XR_001752401.2 13.3% 1_171del;970_6000del
7 human 10351 ABCA8 ATP binding cassette subfam... XR_001752402.2 13% (many diffs)
8 human 10351 ABCA8 ATP binding cassette subfam... XM_005256940.4 12.6% 12.6% 0_1ins183;616_4680del
9 human 10351 ABCA8 ATP binding cassette subfam... XR_002957946.1 11% 1_171del;970_7228del
10 human 10351 ABCA8 ATP binding cassette subfam... XR_002957945.1 8% 1_171del;970_9928del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
864
ORF length:
798
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG GAAGAGAAAG ATCAGTGTGT GTCAACAAAC TTGGGCCTTA TTATGCAAGA
121ACTTTCTTAA AAAATGGAGA ATGAAAAGAG AGTCCTTAAT GGAATGGCTG AATTCATTGC
181TCCTACTACT TTGTTTGTAT ATATATCCTC ATAGTCATCA AGTAAATGAT TTTTCTTCAC
241TGCTTACCAT GGACCTGGGA CGGGTAGATA CATTTAATGA ATCCAGATTT TCTGTTGTAT
301ACACACCTGT CACCAACACG ACCCAACAGA TAATGAATAA AGTAGCCTCT ACTCCCTTCC
361TGGCAGGTAA AGAGGTCTTG GGACTGCCAG ATGAGGAAAG TATTAAAGAA TTCACAGCAA
421ATTATCCTGA AGAAATAGTA AGAGTCACCT TTACTAATAC ATACTCATAT CATTTGAAGT
481TCTTGCTAGG ACATGGAATG CCAGCAAAGA AGGAGCACAA GGACCATACA GCTCATTGTT
541ATGAAACAAA TGAAGATGTT TACTGTGAAG TTTCAGTATT TTGGAAGGAA GGTTTTGTGG
601CTCTTCAAGC TGCCATTAAT GCTGCTATTA TAGAAATCAC AACAAATCAC TCAGTGATGG
661AGGAGCTGAT GTCAGTTACT GGAAAAAATA TGAAGATGCA TTCCTTCATT GGTCAATCAG
721GAGTTATAAC TGATTTGTAC CTTTTTTCCT GCATTATTTC ATTTTCCTCA TTCATTTACT
781ATGCATCTGT TAATGTCACA AGAGAGAGGA AAAGGATGAA GGCCTTGATG ACAATGATGG
841GTCTTCGGGA TTCAGCGTTC TGGTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
901agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)