Construct: ORF ccsbBroadEn_11605

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000168.1_s300c1, BRDN0000391589
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RABL2A (11159)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354417.2 100% 100%
2 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306158.2 97.5% 97.3% 671_687delinsAA
3 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306159.2 97.5% 97.3% 671_687delinsAA
4 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354412.2 97.5% 97.3% 671_687delinsAA
5 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354413.2 97.5% 97.3% 671_687delinsAA
6 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354414.2 97.5% 97.3% 671_687delinsAA
7 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003213.1 97.5% 97.3% 671_687delinsAA
8 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003214.1 97.5% 97.3% 671_687delinsAA
9 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003215.1 97.5% 97.3% 671_687delinsAA
10 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003216.1 97.5% 97.3% 671_687delinsAA
11 human 11159 RABL2A RAB, member of RAS oncogene... XM_024452575.1 97.5% 97.3% 671_687delinsAA
12 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354416.2 97% 96.9% 408_409insGCA;668_684delinsAA
13 human 11159 RABL2A RAB, member of RAS oncogene... NM_007082.5 97% 96.9% 408_409insGCA;668_684delinsAA
14 human 11159 RABL2A RAB, member of RAS oncogene... NM_013412.4 97% 96.9% 408_409insGCA;668_684delinsAA
15 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003220.1 97% 96.9% 408_409insGCA;668_684delinsAA
16 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003222.1 97% 96.9% 408_409insGCA;668_684delinsAA
17 human 11158 RABL2B RAB, member of RAS oncogene... NM_001003789.3 96.9% 96.5% (many diffs)
18 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130919.3 96.9% 96.5% (many diffs)
19 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130920.3 96.9% 96.5% (many diffs)
20 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130921.3 96.9% 96.5% (many diffs)
21 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350003.2 96.9% 96.5% (many diffs)
22 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350004.2 96.9% 96.5% (many diffs)
23 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028552.1 96.9% 96.5% (many diffs)
24 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028555.1 96.9% 96.5% (many diffs)
25 human 11158 RABL2B RAB, member of RAS oncogene... XM_024452147.1 96.9% 96.5% (many diffs)
26 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130922.3 96.5% 96% (many diffs)
27 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350005.2 96.5% 96% (many diffs)
28 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350006.2 96.5% 96% (many diffs)
29 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350007.2 96.5% 96% (many diffs)
30 human 11158 RABL2B RAB, member of RAS oncogene... NM_007081.4 96.5% 96% (many diffs)
31 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028556.1 96.5% 96% (many diffs)
32 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003210.1 95% 94.8% 506_523del;689_705delinsAA
33 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003211.1 95% 94.8% 506_523del;689_705delinsAA
34 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003212.1 94.6% 94.4% 408_409insGCA;503_520del;686_702delinsAA
35 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350016.2 94.4% 94% (many diffs)
36 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350017.2 94.4% 94% (many diffs)
37 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028551.1 94% 93.6% (many diffs)
38 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354405.2 93.4% 93.3% 505_534del;701_717delinsAA
39 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354406.2 93.4% 93.3% 505_534del;701_717delinsAA
40 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354407.2 93.4% 93.3% 505_534del;701_717delinsAA
41 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354408.2 93.4% 93.3% 505_534del;701_717delinsAA
42 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354409.2 93.4% 93.3% 505_534del;701_717delinsAA
43 human 11159 RABL2A RAB, member of RAS oncogene... XM_006712208.3 93.4% 93.3% 505_534del;701_717delinsAA
44 human 11159 RABL2A RAB, member of RAS oncogene... XM_006712209.3 93.4% 93.3% 505_534del;701_717delinsAA
45 human 11159 RABL2A RAB, member of RAS oncogene... XM_011510509.2 93.4% 93.3% 505_534del;701_717delinsAA
46 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003203.1 93.4% 93.3% 505_534del;701_717delinsAA
47 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003204.1 93.4% 93.3% 505_534del;701_717delinsAA
48 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003205.1 93.4% 93.3% 505_534del;701_717delinsAA
49 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003207.1 93.4% 93.3% 505_534del;701_717delinsAA
50 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306160.3 93% 92.8% 408_409insGCA;502_531del;698_714delinsAA
51 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354410.2 93% 92.8% 408_409insGCA;502_531del;698_714delinsAA
52 human 11159 RABL2A RAB, member of RAS oncogene... XM_024452573.1 93% 92.8% 408_409insGCA;502_531del;698_714delinsAA
53 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350008.2 92.8% 92.4% (many diffs)
54 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350009.2 92.8% 92.4% (many diffs)
55 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350010.2 92.8% 92.4% (many diffs)
56 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350011.2 92.8% 92.4% (many diffs)
57 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350012.2 92.8% 92.4% (many diffs)
58 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028543.1 92.8% 92.4% (many diffs)
59 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028544.1 92.8% 92.4% (many diffs)
60 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028546.1 92.8% 92.4% (many diffs)
61 human 11158 RABL2B RAB, member of RAS oncogene... NM_001130923.3 92.4% 92% (many diffs)
62 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350013.2 92.4% 92% (many diffs)
63 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350014.2 92.4% 92% (many diffs)
64 human 11158 RABL2B RAB, member of RAS oncogene... NM_001350015.2 92.4% 92% (many diffs)
65 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028547.1 92.4% 92% (many diffs)
66 human 11159 RABL2A RAB, member of RAS oncogene... NM_001306161.2 69.5% 69.4% 216_217ins192;479_495delinsAA
67 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354421.2 69.5% 69.4% 216_217ins192;479_495delinsAA
68 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354423.2 69.5% 69.4% 216_217ins192;479_495delinsAA
69 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003226.1 69.5% 69.4% 216_217ins192;479_495delinsAA
70 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354424.2 69.1% 68.9% 216_217ins195;476_492delinsAA
71 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354418.2 66.6% 66.5% 216_217ins192;313_342del;509_525delinsAA
72 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354419.2 66.6% 66.5% 216_217ins192;313_342del;509_525delinsAA
73 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003223.1 66.6% 66.5% 216_217ins192;313_342del;509_525delinsAA
74 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354426.2 60.4% 60.2% 0_1ins255;416_432delinsAA
75 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354425.2 57.8% 57.7% 0_1ins255;250_279del;446_462delinsAA
76 human 11159 RABL2A RAB, member of RAS oncogene... XM_017003230.1 57.8% 57.7% 0_1ins255;250_279del;446_462delinsAA
77 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354427.2 57.3% 54.5% 0_1ins196;20_21ins80;395_411delinsAA
78 human 11159 RABL2A RAB, member of RAS oncogene... NM_001354428.2 56.9% 54.1% (many diffs)
79 human 11159 RABL2A RAB, member of RAS oncogene... XM_024452576.1 54.9% 52.3% (many diffs)
80 human 11158 RABL2B RAB, member of RAS oncogene... XM_017028559.2 48.4% 42.1% (many diffs)
81 human 11159 RABL2A RAB, member of RAS oncogene... XR_002959036.1 26.8% 1_200del;609_955del;1218_2500delinsAA
82 human 11159 RABL2A RAB, member of RAS oncogene... NR_148882.2 26% 1_188del;482_483ins112;747_2029delinsAA
83 human 11159 RABL2A RAB, member of RAS oncogene... NR_148881.2 26% 1_192del;486_487ins112;751_2033delinsAA
84 human 11159 RABL2A RAB, member of RAS oncogene... NR_148879.2 25.9% 1_188del;484_485ins115;744_2026delinsAA
85 human 11159 RABL2A RAB, member of RAS oncogene... NR_148880.2 22% (many diffs)
86 mouse 68708 Rabl2 RAB, member RAS oncogene fa... NM_026817.3 84.5% 82.5% (many diffs)
87 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_006521326.3 84.1% 82.1% (many diffs)
88 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_006521327.3 71.6% 70.9% (many diffs)
89 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_006521329.3 52.5% 49.5% (many diffs)
90 mouse 68708 Rabl2 RAB, member RAS oncogene fa... XM_011245717.2 52.5% 49.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
741
ORF length:
672
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAGAAGAC AAAACCAAAC CGAGTGAGTT GGACCAAGGG AAGTATGATG
121CTGATGACAA CGTGAAGATC ATCTGCCTGG GAGACAGCGC AGTGGGCAAA TCCAAACTCA
181TGGAGAGATT TCTCATGGAT GGCTTTCAGC CACAGCAGCT GTCCACGTAC GCCCTGACCC
241TGTACAAGCA CACAGCCACG GTAGATGGCA AGACCATCCT TGTGGACTTT TGGGACACGG
301CAGGCCAGGA GCGGTTCCAG AGCATGCATG CCTCCTACTA CCACAAGGCC CATGCCTGCA
361TCATGGTGTT TGATATACAG AGGAAAGTCA CCTATAGGAA CCTGAGCACC TGGTATACAG
421AGCTTCGGGA GTTCAGGCCA GAGATCCCAT GCATCGTGGT GGCCAATAAA ATTGATGCAG
481ACATAAACGT GACCCAAAAA AGCTTCAATT TTGCCAAGAA GTTCTCCCTG CCCCTGTATT
541TCGTCTCGGC TGCTGATGGT ACCAATGTTG TGAAGCTCTT CAATGATGCA ATTCGATTAG
601CTGTGTCTTA CAAACAGAAC TCCCAGGACT TCATGGATGA GATTTTTCAG GAGCTCGAGA
661ACTTCAGCTT GGAGCAGGAA GAGGAGGACG TGCCAGACCA GGAACAGAGC AGCAGCATCG
721AGACCCCATC AGAGGAGGAA TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
781attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)