Construct: ORF ccsbBroadEn_11696
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015399.1_s300c1, BRDN0000390717
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULF1 (23213)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23213 | SULF1 | sulfatase 1 | XM_006716442.1 | 96.7% | 95.6% | (many diffs) |
| 2 | human | 23213 | SULF1 | sulfatase 1 | XM_006716441.1 | 71.8% | 68.2% | (many diffs) |
| 3 | human | 23213 | SULF1 | sulfatase 1 | NM_001128204.2 | 70.2% | 69.3% | (many diffs) |
| 4 | human | 23213 | SULF1 | sulfatase 1 | NM_001128205.2 | 70.2% | 69.3% | (many diffs) |
| 5 | human | 23213 | SULF1 | sulfatase 1 | NM_001128206.2 | 70.2% | 69.3% | (many diffs) |
| 6 | human | 23213 | SULF1 | sulfatase 1 | NM_015170.2 | 70.2% | 69.3% | (many diffs) |
| 7 | human | 23213 | SULF1 | sulfatase 1 | XM_024447112.1 | 70.2% | 69.3% | (many diffs) |
| 8 | human | 23213 | SULF1 | sulfatase 1 | XM_011517495.2 | 61.7% | 58% | (many diffs) |
| 9 | human | 23213 | SULF1 | sulfatase 1 | XM_017013250.2 | 61.7% | 58% | (many diffs) |
| 10 | human | 23213 | SULF1 | sulfatase 1 | XM_006716438.3 | 56.2% | 53.4% | (many diffs) |
| 11 | human | 23213 | SULF1 | sulfatase 1 | XM_006716439.3 | 56.2% | 53.4% | (many diffs) |
| 12 | human | 23213 | SULF1 | sulfatase 1 | XM_006716440.3 | 56.2% | 53.4% | (many diffs) |
| 13 | human | 23213 | SULF1 | sulfatase 1 | XM_011517494.2 | 56.2% | 53.4% | (many diffs) |
| 14 | human | 23213 | SULF1 | sulfatase 1 | NR_132437.1 | 42.7% | 1_73del;989T>C;2006_4518del | |
| 15 | human | 23213 | SULF1 | sulfatase 1 | NR_156414.2 | 31.9% | (many diffs) | |
| 16 | human | 23213 | SULF1 | sulfatase 1 | NR_156415.2 | 31% | (many diffs) | |
| 17 | mouse | 240725 | Sulf1 | sulfatase 1 | NM_001198565.1 | 59.6% | 63.2% | (many diffs) |
| 18 | mouse | 240725 | Sulf1 | sulfatase 1 | NM_001198566.1 | 59.6% | 63.2% | (many diffs) |
| 19 | mouse | 240725 | Sulf1 | sulfatase 1 | NM_172294.1 | 59.6% | 63.2% | (many diffs) |
| 20 | mouse | 240725 | Sulf1 | sulfatase 1 | XM_006495510.3 | 47.9% | 49.2% | (many diffs) |
| 21 | mouse | 240725 | Sulf1 | sulfatase 1 | XM_006495511.3 | 47.9% | 49.2% | (many diffs) |
| 22 | mouse | 240725 | Sulf1 | sulfatase 1 | XM_006495512.3 | 47.9% | 49.2% | (many diffs) |
| 23 | mouse | 240725 | Sulf1 | sulfatase 1 | XM_006495513.3 | 47.9% | 49.2% | (many diffs) |
| 24 | mouse | 240725 | Sulf1 | sulfatase 1 | XM_006495514.1 | 47.9% | 49.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1998
- ORF length:
- 1932
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CTATGGAACT CCTAGTTATA ACTATGCACC AAATATGGAT AAACACTGGA 121 TTATGCAGTA CACAGGACCA ATGCTGCCCA TCCACATGGA ATTTACAAAC ATTCTACAGC 181 GCAAAAGGCT CCAGACTTTG ATGTCAGTGG ATGATTCTGT GGAGAGGCTG TATAACATGC 241 TCGTGGAGAC GGGGGAGCTG GAGAATACTT ACATCATTTA CACCGCCGAC CATGGTTACC 301 ATATTGGGCA GTTTGGACTG GTCAAGGGGA AATCCATGCC ATATGACTTT GATATTCGTG 361 TGCCTTTTTT TATTCGTGGT CCAAGTGTAG AACCAGGATC AATAGTCCCA CAGATCGTTC 421 TCAACATTGA CTTGGCCCCC ACGATCCTGG ATATTGCTGG GCTCGACACA CCTCCTGATG 481 TGGACGGCAA GTCTGTCCTC AAACTTCTGG ACCCAGAAAA GCCAGGTAAC AGGTTTCGAA 541 CAAACAAGAA GGCCAAAATT TGGCGTGATA CATTCCTAGT GGAAAGAGGC AAATTTCTAC 601 GTAAGAAGGA AGAATCCAGC AAGAATATCC AACAGTCAAA TCACTTGCCC AAATATGAAC 661 GGGTCAAAGA ACTATGCCAG CAGGCCAGGT ACCAGACAGC CTGTGAACAA CCGGGGCAGA 721 AGTGGCAATG CATTGAGGAT ACATCTGGCA AGCTTCGAAT TCACAAGTGT AAAGGACCCA 781 GTGACCTGCT CACAGTCCGG CAGAGCACGC GGAACCTCTA CGCTCGCGGC TTCCATGACA 841 AAGACAAAGA GTGCAGTTGT AGGGAGTCTG GTTACCGTGC CAGCAGAAGC CAAAGAAAGA 901 GTCAACGGCA ATTCTTGAGA AACCAGGGGA CTCCAAAGTA CAAGCCCAGA TTTGTCCATA 961 CTCGGCAGAC ACGTTCCTTG CCCGTCGAAT TTGAAGGTGA AATATATGAC ATAAATCTGG 1021 AAGAAGAAGA AGAATTGCAA GTGTTGCAAC CAAGAAACAT TGCTAAGCGT CATGATGAAG 1081 GCCACAAGGG GCCAAGAGAT CTCCAGGCTT CCAGTGGTGG CAACAGGGGC AGGATGCTGG 1141 CAGATAGCAG CAACGCCGTG GGCCCACCTA CCACTGTCCG AGTGACACAC AAGTGTTTTA 1201 TTCTTCCCAA TGACTCTATC CATTGTGAGA GAGAACTGTA CCAATCGGCC AGAGCGTGGA 1261 AGGACCATAA GGCATACATT GACAAAGAGA TTGAAGCTCT GCAAGATAAA ATTAAGAATT 1321 TAAGAGAAGT GAGAGGACAT CTGAAGAGAA GGAAGCCTGA GGAATGTAGC TGCAGTAAAC 1381 AAAGCTATTA CAATAAAGAG AAAGGTGTAA AAAAGCAAGA GAAATTAAAG AGCCATCTTC 1441 ACCCATTCAA GGAGGCTGCT CAGGAAGTAG ATAGCAAACT GCAACTTTTC AAGGAGAACA 1501 ACCGTAGGAG GAAGAAGGAG AGGAAGGAGA AGAGACGGCA GAGGAAGGGG GAAGAGTGCA 1561 GCCTGCCTGG CCTCACTTGC TTCACGCATG ACAACAACCA CTGGCAGACA GCCCCGTTCT 1621 GGAACCTGGG ATCTTTCTGT GCTTGCACGA GTTCTAACAA TAACACCTAC TGGTGTTTGC 1681 GTACAGTTAA TGAGACGCAT AATTTTCTTT TCTGTGAGTT TGCTACTGGC TTTTTGGAGT 1741 ATTTTGATAT GAATACAGAT CCTTATCAGC TCACAAATAC AGTGCACACG GTAGAACGAG 1801 GCATTTTGAA TCAGCTACAC GTACAACTAA TGGAGCTCAG AAGCTGTCAA GGATATAAGC 1861 AGTGCAACCC AAGACCTAAG AATCTTGATG TTGGAAATAA AGATGGAGGA AGCTATGACC 1921 TACACAGAAT GTTGCTGTTC CTGGTACCCT GTTCGGCCCC TCTAACCTCC AGAGCTATGG 1981 TCTCAGATGC TTCCTTTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2041 gcttatcaat ttgttgcaac gaac