Construct: ORF ccsbBroadEn_11701
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008571.1_s300c1, BRDN0000393837
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SEL1L3 (23231)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23231 | SEL1L3 | SEL1L family member 3 | NM_001297594.2 | 99.8% | 99.8% | 2014_2015delTAinsAT;2850G>A |
| 2 | human | 23231 | SEL1L3 | SEL1L family member 3 | XM_024453954.1 | 99.8% | 99.8% | 2014_2015delTAinsAT;2850G>A |
| 3 | human | 23231 | SEL1L3 | SEL1L family member 3 | XM_024453953.1 | 96% | 94.8% | (many diffs) |
| 4 | human | 23231 | SEL1L3 | SEL1L family member 3 | NM_001297592.2 | 89.1% | 89.1% | 1_354del;2368_2369delTAinsAT;3204G>A |
| 5 | human | 23231 | SEL1L3 | SEL1L family member 3 | NM_015187.5 | 86.3% | 86.3% | 1_459del;2473_2474delTAinsAT;3309G>A |
| 6 | human | 23231 | SEL1L3 | SEL1L family member 3 | XM_011513819.2 | 83.1% | 82% | (many diffs) |
| 7 | human | 23231 | SEL1L3 | SEL1L family member 3 | XM_024453955.1 | 68% | 68% | 1999G>A;2001_2001delAins937 |
| 8 | human | 23231 | SEL1L3 | SEL1L family member 3 | XR_001741182.2 | 43.4% | (many diffs) | |
| 9 | mouse | 231238 | Sel1l3 | sel-1 suppressor of lin-12-... | XM_011240730.1 | 86.1% | 87.2% | (many diffs) |
| 10 | mouse | 231238 | Sel1l3 | sel-1 suppressor of lin-12-... | NM_172710.3 | 74.2% | 75.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3003
- ORF length:
- 2937
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT TTACAGAGAT GATTATTTCA TCAGACATTC CATCTCTGTA TCTGCAGTGA 121 TAGTACGCGC CTGGATTACT CACAAATACA GTGGCAGAGA CTGGAATGTT AAATGGGAGG 181 AAAACTTGCT CCATGCTGTA GCAAAGAATT ATACCCTCCT GCAGACCATC CCGCCTTTTG 241 AACGCCCTTT CAAAGATCAT CAAGTGTGCC TTGAGTGGAA CATGGGTTAT ATTTGGAACC 301 TTCGGGCAAA CAGGATTCCA CAGTGTCCTC TGGAAAATGA TGTGGTTGCC CTGCTTGGCT 361 TTCCTTATGC CTCCAGTGGA GAAAACACAG GCATTGTCAA GAAGTTCCCG AGGTTTCGGA 421 ACCGAGAGCT GGAGGCCACT CGACGCCAGA GGATGGATTA CCCAGTGTTT ACTGTTTCAT 481 TGTGGCTTTA TTTACTCCAT TATTGCAAGG CCAACCTCTG TGGGATTCTG TACTTTGTTG 541 ACTCTAATGA GATGTACGGC ACACCTTCTG TATTTCTTAC GGAAGAGGGC TATTTGCATA 601 TTCAGATGCA TCTTGTCAAA GGGGAAGACC TTGCTGTAAA AACTAAATTC ATCATACCTT 661 TGAAGGAGTG GTTTCGACTG GATATCTCTT TTAACGGAGG CCAGATAGTA GTAACCACTA 721 GCATTGGACA GGATTTGAAA AGCTACCACA ATCAGACCAT TAGCTTCCGG GAGGATTTCC 781 ATTATAATGA CACAGCTGGG TACTTCATTA TTGGAGGGAG CAGGTATGTG GCTGGCATTG 841 AAGGGTTTTT TGGACCCCTG AAGTACTATC GCCTTCGCAG TCTGCACCCC GCCCAGATTT 901 TTAATCCCCT CCTTGAGAAG CAACTTGCTG AACAAATCAA GTTATATTAT GAAAGGTGTG 961 CTGAGGTTCA AGAAATAGTA TCTGTGTATG CATCTGCAGC AAAGCACGGG GGCGAGAGAC 1021 AAGAAGCATG CCACCTCCAC AACTCCTACC TGGACCTCCA GCGCAGGTAT GGGAGACCCT 1081 CGATGTGCAG AGCCTTCCCC TGGGAGAAGG AGCTGAAAGA CAAACACCCC AGCTTGTTCC 1141 AGGCATTGCT GGAGATGGAT CTGCTGACCG TGCCAAGGAA CCAAAATGAA TCTGTATCAG 1201 AAATCGGTGG GAAGATATTT GAGAAGGCTG TAAAGAGACT CTCTAGCATT GATGGTCTTC 1261 ACCAAATTAG CTCTATCGTC CCCTTTCTGA CGGATTCCAG CTGCTGTGGA TACCATAAAG 1321 CATCCTACTA CCTTGCAGTC TTTTATGAGA CTGGATTAAA TGTTCCTCGG GATCAGCTGC 1381 AGGGCATGTT GTATAGTTTG GTTGGAGGCC AGGGGAGTGA GAGGCTGTCT TCAATGAATC 1441 TTGGGTATAA ACACTACCAG GGTATTGACA ACTACCCCCT GGACTGGGAA CTGTCGTATG 1501 CCTACTACAG CAACATTGCC ACCAAGACAC CCCTTGACCA GCACACACTG CAAGGAGATC 1561 AGGCATATGT TGAAACAATT AGACTAAAAG ATGATGAAAT ACTCAAGGTA CAAACCAAAG 1621 AAGATGGAGA TGTCTTTATG TGGTTGAAGC ATGAAGCTAC CCGAGGCAAT GCAGCAGCTC 1681 AGCAACGATT GGCCCAGATG CTGTTCTGGG GGCAGCAAGG TGTGGCCAAG AATCCCGAAG 1741 CAGCAATTGA GTGGTACGCC AAGGGCGCCC TGGAGACGGA GGATCCTGCG TTAATCTATG 1801 ACTATGCCAT TGTGCTATTC AAGGGTCAAG GAGTAAAAAA GAACAGACGG CTTGCCTTAG 1861 AGCTGATGAA GAAAGCAGCT TCCAAGGGAT TGCATCAGGC AGTCAATGGC CTGGGATGGT 1921 ATTACCACAA ATTCAAGAAA AATTACGCCA AAGCAGCAAA GTACTGGTTA AAAGCAGAAG 1981 AAATGGGGAA CCCAGATGCG TCATACAATC TTGGAGTCCT GCATTTGGAT GGCATCTTCC 2041 CTGGAGTTCC TGGAAGGAAT CAAACTTTAG CTGGTGAAAT TTTCCATAAG GCTGCGCAAG 2101 GTGGACACAT GGAAGGGACC TTGTGGTGTT CTCTCTACTA TATCACAGGC AACCTGGAGA 2161 CATTCCCTAG AGATCCTGAG AAAGCTGTTG TATGGGCAAA ACATGTAGCT GAGAAAAATG 2221 GCTACTTGGG CCATGTCATC CGCAAAGGCC TCAATGCCTA CCTGGAAGGT TCATGGCATG 2281 AAGCTTTGCT GTATTATGTT TTAGCAGCAG AAACTGGAAT TGAAGTGTCA CAGACAAATT 2341 TAGCACACAT CTGTGAGGAG AGGCCAGACC TGGCCAGGAG ATACTTGGGT GTTAACTGTG 2401 TTTGGAGATA CTATAATTTC TCTGTTTTTC AAATCGATGC TCCTTCCTTT GCATATTTGA 2461 AGATGGGAGA CCTTTACTAC TATGGCCACC AAAACCAGTC ACAAGACCTG GAGTTGTCTG 2521 TGCAGATGTA CGCCCAAGCC GCCCTGGATG GAGACTCCCA GGGATTTTTT AACCTGGCCC 2581 TGCTAATCGA GGAAGGTACG ATAATCCCAC ACCATATCTT GGATTTCTTG GAAATTGACT 2641 CAACTCTCCA TTCTAATAAC ATCTCCATTC TCCAGGAACT GTACGAAAGG TGCTGGAGCC 2701 ACAGTAACGA GGAGTCCTTC AGCCCCTGCT CCTTGGCCTG GCTTTACCTG CACTTGCGGC 2761 TTCTCTGGGG TGCTATCCTG CACTCAGCCC TGATCTACTT TCTGGGAACC TTTCTGCTAT 2821 CCATATTGAT CGCCTGGACT GTGCAGTATT TCCAGTCTGT CTCAGCAAGC GATCCCCCTC 2881 CAAGACCATC CCAGGCCTCC CCAGACACTG CCACATCCAC TGCAAGTCCA GCTGTGACTC 2941 CAGCTGCAGA TGCCTCTGAC CAAGACCAGC CCACAGTAAC TAATAACCCG GAGCCACGTG 3001 GGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 3061 gcaacgaac