Transcript: Human NM_001297592.2

Homo sapiens SEL1L family member 3 (SEL1L3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
SEL1L3 (23231)
Length:
4340
CDS:
55..3348

Additional Resources:

NCBI RefSeq record:
NM_001297592.2
NBCI Gene record:
SEL1L3 (23231)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001297592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000161585 GAACGCCCTTTCAAAGATCAT pLKO.1 583 CDS 100% 4.950 6.930 N SEL1L3 n/a
2 TRCN0000187272 CGCCTGGATTACTCACAAATA pLKO.1 471 CDS 100% 13.200 9.240 N SEL1L3 n/a
3 TRCN0000161039 GCTACCACAATCAGACCATTA pLKO.1 1085 CDS 100% 10.800 7.560 N SEL1L3 n/a
4 TRCN0000160325 CCAAAGGTCATCAAACACATA pLKO.1 3537 3UTR 100% 4.950 3.465 N SEL1L3 n/a
5 TRCN0000204183 GCCAGATAGTAGTAACCACTA pLKO.1 1043 CDS 100% 4.050 2.835 N SEL1L3 n/a
6 TRCN0000159090 GCTGAGGTTCAAGAAATAGTA pLKO.1 1303 CDS 100% 5.625 3.375 N SEL1L3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001297592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11701 pDONR223 100% 89.1% 89.1% None 1_354del;2368_2369delTAinsAT;3204G>A n/a
2 ccsbBroad304_11701 pLX_304 0% 89.1% 89.1% V5 1_354del;2368_2369delTAinsAT;3204G>A n/a
3 TRCN0000479888 TTGTCTTGTGTTTTTGCACATTTA pLX_317 13.8% 89.1% 89.1% V5 1_354del;2368_2369delTAinsAT;3204G>A n/a
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