Construct: ORF ccsbBroadEn_11816
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008483.1_s300c1, BRDN0000387868
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTLL3 (26140)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26140 | TTLL3 | tubulin tyrosine ligase like 3 | NM_001366051.2 | 56% | 55.5% | (many diffs) |
| 2 | human | 100526693 | ARPC4-TTLL3 | ARPC4-TTLL3 readthrough | NM_001198793.1 | 49.6% | 43.5% | (many diffs) |
| 3 | human | 26140 | TTLL3 | tubulin tyrosine ligase like 3 | NM_001025930.5 | 47.2% | 46.8% | (many diffs) |
| 4 | human | 26140 | TTLL3 | tubulin tyrosine ligase like 3 | NR_037162.2 | 23.6% | (many diffs) | |
| 5 | mouse | 101100 | Ttll3 | tubulin tyrosine ligase-lik... | NM_133923.6 | 40% | 39.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1371
- ORF length:
- 1302
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACATCGAC AAGGACCTGG AGGCCCCGCT GTACCTCACC CCCGAGGGCT 121 GGTCCCTCTT CCTCCAGCGC TACTACCAAG TGGTCCACGA AGGGGCAGAA CTCAGGCACC 181 TCGACACTCA GGTCCAGCGC TGTGAGGACA TCCTGCAGCA GCTGCAGGCC GTGGTACCCC 241 AGATAGACAT GGAAGGGGAT CGCAACATCT GGATCGTGAA GCCAGGAGCC AAGTCCCGTG 301 GACGAGGCAT CATGTGCATG GACCACCTGG AGGAGATGCT GAAGCTGGTG AACGGCAACC 361 CCGTGGTGAT GAAGGACGGC AAGTGGGTGG TGCAGAAGTA TATTGAGCGG CCCCTCCTCA 421 TCTTTGGCAC CAAGTTTGAC CTCAGACAGT GGTTCCTGGT AACTGACTGG AACCCACTTA 481 CCGTGTGGTT CTACCGCGAC AGCTATATCC GCTTTTCCAC GCAGCCCTTC TCCCTGAAGA 541 ACCTGGACAA CTCAGTGCAC CTGTGCAACA ACTCCATCCA GAAGCACCTG GAGAACTCAT 601 GCCATCGGCA TCCACTGCTT CCGCCAGACA ACATGTGGTC TAGCCAGAGG TTCCAGGCCC 661 ACCTGCAGGA GATGGGTGCC CCAAATGCTT GGTCCACCAT CATCGTGCCT GGCATGAAGG 721 ATGCTGTGAT CCACGCACTT CAGACCTCCC AGGACACCGT GCAATGTCGG AAGGCCAGCT 781 TTGAGCTCTA TGGCGCTGAC TTCGTGTTCG GGGAGGACTT CCAGCCCTGG CTGATTGAGA 841 TCAACGCCAG CCCCACGATG GCACCCTCCA CAGCAGTCAC TGCCCGGCTC TGTGCTGGCG 901 TGCAAGCTGA CACCCTGCGC GTGGTCATTG ACCGGAGGCT GGACCGCAAC TGTGACACAG 961 GAGCCTTTGA GCTCATCTAT AAGCAGCCTG CTGTGGAGGT GCCTCAATAT GTGGGCATCC 1021 GGCTCCTGGT AGAGGGCTTC ACCATCAAGA AGCCCATGGC GATGTGTCAT CGGCGGATGG 1081 GGGTCCGCCC AGCAGTCCCT CTGCTGACCC AGCGAGGCTC TGGGGAAGCC CGTCACCACT 1141 TCCCCAGCCT CCACACCAAG GCCCAGCTGC CTTCTCCCCA TGTACTCCGA CACCAGGGCC 1201 AGGTCCTCAG ACGACAGCAC AGCAAGCTGG TGGGCACTAA GGCCCTGTCG ACCACAGGCA 1261 AGGCCTTGAG GACTCTACCC ACGGCTAAGG TCTTCATTTC CCTCCCACCG AACCTTGATT 1321 TCAAGGTGGC ACCCAGCATC CTGAAGCCAA GAAAGGTGGG CCTCGACCTG TTGCCAACTT 1381 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac