Construct: ORF ccsbBroadEn_11827

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007496.1_s300c1, BRDN0000394750
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNNM1 (26507)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26507 CNNM1 cyclin and CBS domain dival... NM_020348.3 61.5% 61.6% 1_1095del;1284T>G
2 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345887.1 60.2% 60.2% 1_1095del;1284T>G;2177_2239del
3 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345888.1 56.3% 56.2% 1_1095del;1284T>G;2524_2525ins150
4 human 26507 CNNM1 cyclin and CBS domain dival... NM_001345889.1 55.1% 55% (many diffs)
5 human 26507 CNNM1 cyclin and CBS domain dival... XM_011539631.3 49.4% 48.9% (many diffs)
6 human 26507 CNNM1 cyclin and CBS domain dival... XR_945667.2 48.4% (many diffs)
7 human 26507 CNNM1 cyclin and CBS domain dival... NR_144311.1 29.4% (many diffs)
8 human 26507 CNNM1 cyclin and CBS domain dival... XR_002956974.1 29.2% (many diffs)
9 mouse 83674 Cnnm1 cyclin M1 NM_031396.2 54.7% 58% (many diffs)
10 mouse 83674 Cnnm1 cyclin M1 XM_006527482.3 54.1% 57.4% (many diffs)
11 mouse 83674 Cnnm1 cyclin M1 XM_006527481.3 53.5% 56.7% (many diffs)
12 mouse 83674 Cnnm1 cyclin M1 XM_006527480.3 53% 56.2% (many diffs)
13 mouse 83674 Cnnm1 cyclin M1 XR_001782623.1 42.7% (many diffs)
14 mouse 83674 Cnnm1 cyclin M1 XM_006527483.3 35.8% 38.1% (many diffs)
15 mouse 83674 Cnnm1 cyclin M1 XM_006527485.3 34.5% 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1827
ORF length:
1758
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAGCCGCC TTCCCCGTGT GCTACCCGCT GGGCCGCCTG CTGGACTGGG
121CGCTGCGCCA GGAGATAAGC ACCTTCTACA CGCGGGAGAA GTTGCTGGAG ACGTTGCGGG
181CCGCAGACCC CTACAGTGAC CTGGTGAAGG AGGAGCTCAA CATCATACAG GGTGCCCTGG
241AGCTGCGCAC CAAAGTGGTG GAGGAGGTGC TGACCCCCCT GGGAGACTGC TTCATGCTGC
301GCTCAGACGC GGTGCTCGAC TTCGCCACTG TCTCCGAGAT CCTGCGCAGC GGCTACACTC
361GCATCCCAGT GTACGAGGGT GACCAGCGGC ACAACATTGT GGACATTTTA TTTGTCAAGG
421ACTTGGCCTT CGTGGACCCC GACGACTGCA CCCCGCTCCT CACTGTCACC CGCTTCTACA
481ACCGGCCCCT GCATTGTGTT TTCAATGACA CCCGACTGGA CACGGTTCTG GAGGAGTTTA
541AGAAGGGAAA ATCTCACCTG GCCATTGTCC AGCGGGTGAA TAATGAGGGA GAAGGGGACC
601CTTTCTATGA GGTGATGGGC ATTGTCACGC TGGAGGATAT CATAGAGGAG ATTATCAAGT
661CGGAGATCCT GGATGAAACT GATCTCTACA CTGACAATCG GAAAAAGCAG AGGGTCCCGC
721AACGGGAGCG GAAGCGGCAT GACTTCTCCT TGTTTAAGCT TTCGGACACG GAGATGCGGG
781TGAAGATCTC ACCACAGCTT CTGCTAGCCA CACACCGCTT CATGGCCACA GAAGTGGAGC
841CCTTTAAGTC TCTGTACCTT TCGGAGAAGA TCCTGCTCCG GCTCCTGAAA CATCCCAACG
901TGATCCAGGA GCTGAAGTTT GATGAGAAGA ACAAGAAGGC CCCGGAACAC TACCTCTACC
961AGCGCAACCG CCCTGTGGAC TACTTTGTGC TGCTTCTACA GGGTAAAGTG GAGGTGGAGG
1021TTGGTAAGGA AGGCCTTCGC TTTGAAAATG GAGCCTTTAC TTACTATGGC GTCCCAGCCA
1081TCATGACCAC TGCTTGCTCA GATAATGACG TGCGGAAGGT TGGAAGTCTG GCTGGATCTT
1141CTGTCTTTCT AAACCGGTCC CCTTCTCGCT GCAGTGGGTT GAATCGCTCT GAGTCTCCAA
1201ACCGAGAGCG CAGTGACTTT GGGGGCAGCA ACACCCAGCT GTACAGCAGC AGCAACAACC
1261TCTACATGCC TGACTACTCA GTCCACATCC TCAGCGATGT GCAGTTTGTG AAGATCACAC
1321GGCAGCAATA TCAGAACGCA CTCACTGCCT GCCACATGGA CAGCTCACCT CAGTCCCCTG
1381ACATGGAGGC CTTCACAGAC GGGGACTCCA CTAAGGCCCC CACAACCCGG GGCACACCCC
1441AGACCCCTAA GGATGACCCC GCCATCACGC TCCTCAACAA CAGGAACAGC CTGCCGTGCA
1501GCCGCTCAGA CGGGCTGAGA AGCCCCAGCG AGGTAGTGTA CCTGAGGATG GAGGAGCTGG
1561CCTTCACCCA GGAAGAAATG ACTGACTTCG AGGAGCACAG CACACAGCAG CTCACGCTGT
1621CTCCTGCAGC CGTTCCCACG AGAGCAGCAT CAGATAGTGA ATGTTGTAAC ATCAACCTGG
1681ATACAGAGAC CAGCCCCTGC AGTAGCGATT TTGAGGAAAA CGTGGGCAAG AAGCTGCTGA
1741GAACCTTGAG TGGCCAAAAA AGGAAGAGGT CACCAGAAGG AGAGAGAACC TCTGAGGACA
1801ACTCCAATTT AACACCTCTG ATCACATTGC CAACTTTCTT GTACAAAGTt ggcattataa
1861gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)