Construct: ORF ccsbBroadEn_12027

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012742.1_s300c1, BRDN0000456668
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CNTN5 (53942)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 53942 CNTN5 contactin 5 NM_001243271.2 67.7% 67.7% 1_882del
2 human 53942 CNTN5 contactin 5 NM_175566.2 60.1% 60.1% 1_660del;2511_3078delinsA
3 human 53942 CNTN5 contactin 5 XM_011542871.1 60.1% 60.1% 1_660del;2511_3078delinsA
4 human 53942 CNTN5 contactin 5 NM_001243270.2 56% 56% 1_882del;2733_3300delinsA
5 human 53942 CNTN5 contactin 5 NM_014361.4 56% 56% 1_882del;2733_3300delinsA
6 human 53942 CNTN5 contactin 5 XM_017017926.1 56% 56% 1_882del;2733_3300delinsA
7 human 53942 CNTN5 contactin 5 XM_017017929.1 41.6% 39.8% (many diffs)
8 human 53942 CNTN5 contactin 5 XM_011542873.1 38.2% 36.6% (many diffs)
9 human 53942 CNTN5 contactin 5 XM_017017927.1 38.2% 36.6% (many diffs)
10 human 53942 CNTN5 contactin 5 XM_017017928.1 38.2% 36.6% (many diffs)
11 human 53942 CNTN5 contactin 5 XR_001747909.1 26.7% 1_1386del;2388_2389ins121;3116_6351delinsA
12 mouse 244682 Cntn5 contactin 5 NM_001033359.2 60.2% 63.9% (many diffs)
13 mouse 244682 Cntn5 contactin 5 XM_006509873.3 50.9% 53.9% (many diffs)
14 mouse 244682 Cntn5 contactin 5 NM_001170787.1 49% 52% (many diffs)
15 mouse 244682 Cntn5 contactin 5 XM_006509872.3 49% 52% (many diffs)
16 mouse 244682 Cntn5 contactin 5 XM_017313363.1 48.9% 51.8% (many diffs)
17 mouse 244682 Cntn5 contactin 5 XM_006509866.3 47.8% 50.6% (many diffs)
18 mouse 244682 Cntn5 contactin 5 XM_006509867.3 47.8% 50.6% (many diffs)
19 mouse 244682 Cntn5 contactin 5 XM_006509868.3 47.8% 50.6% (many diffs)
20 mouse 244682 Cntn5 contactin 5 XM_006509869.3 47.8% 50.6% (many diffs)
21 mouse 244682 Cntn5 contactin 5 XM_006509870.3 47.8% 50.6% (many diffs)
22 mouse 244682 Cntn5 contactin 5 XM_011242366.1 47.8% 50.6% (many diffs)
23 mouse 244682 Cntn5 contactin 5 XM_006509874.3 30.9% 31.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1920
ORF length:
1851
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGAGAATAT GAGCCGAAAA TTGAGGTCCA TTTTCCTTTC ACGGTTACAG
121CTGCTAAAGG AACAACTGTT AAGATGGAAT GCTTTGCACT TGGCAACCCC GTTCCAACAA
181TCACATGGAT GAAGGTTAAT GGTTATATTC CTAGTAAGGC ACGTCTGCGG AAATCTCAGG
241CGGTGCTGGA AATACCGAAT GTACAGCTGG ATGATGCAGG CATTTATGAG TGCAGAGCTG
301AAAACTCACG TGGAAAAAAT TCCTTTCGTG GACAATTACA AGTATACACC TACCCACACT
361GGGTAGAAAA ACTGAATGAT ACTCAGTTAG ACAGTGGGAG CCCTCTCCGA TGGGAATGTA
421AGGCTACTGG AAAACCCAGA CCCACGTATC GTTGGCTGAA GAATGGAGTA CCCCTCTCAC
481CTCAGAGTAG GGTTGAGATG GTTAATGGAG TATTGATGAT CCACAATGTG AATCAATCAG
541ATGCTGGAAT GTATCAGTGT TTGGCTGAAA ATAAGTATGG AGCCATTTAC GCTAGTGCTG
601AGCTGAAGAT TCTAGCTTCA GCTCCCACTT TTGCACTGAA TCAACTGAAG AAAACAATAA
661TTGTTACCAA AGACCAAGAA GTTGTCATAG AGTGCAAACC CCAAGGCTCT CCAAAACCAA
721CCATCTCTTG GAAGAAAGGA GACAGAGCAG TTAGAGAAAA CAAAAGAATA GCTATTCTTC
781CAGACGGGAG TCTACGGATC CTAAATGCTT CCAAATCAGA CGAGGGAAAG TACGTTTGCC
841GAGGGGAAAA CGTCTTTGGT TCTGCTGAAA TTATAGCTTC GCTATCTGTA AAAGAACCTA
901CAAGGATAGA ACTTACTCCT AAAAGAACAG AATTGACAGT GGGAGAAAGC ATTGTCCTTA
961ATTGCAAAGC AATTCACGAT GCTAGTTTGG ATGTCACTTT CTACTGGACT CTGAAAGGAC
1021AGCCTATTGA TTTCGAGGAA GAGGGTGGAC ATTTTGAAAG CATCAGGGCC CAAGCATCCT
1081CTGCAGATTT AATGATCAGG AACATCCTTC TGATGCATGC TGGGAGATAT GGCTGCAGGG
1141TACAGACCAC AGCAGACAGT GTGTCAGATG AGGCAGAACT TCTTGTTAGG GGACCCCCAG
1201GCCCACCTGG GATAGTAATT GTTGAGGAAA TAACCGAAAG TACGGCCACA CTGTCCTGGA
1261GCCCAGCAGC TGACAACCAC AGCCCAATCT CCTCCTACAA CCTTCAAGCT CGCAGCCCAT
1321TTTCCCTGGG CTGGCAAACA GTAAAGACAG TCCCAGAAAT CATAACAGGG GACATGGAGT
1381CAGCCATGGC TGTGGACCTA AATCCCTGGG TGGAATATGA ATTTCGAGTG GTAGCCACCA
1441ACCCTATTGG GACAGGAGAT CCAAGCACCC CATCTCGAAT GATCCGCACA AATGAAGCAG
1501TTCCGAAGAC AGCACCCACC AATGTAAGCG GAAGAAGTGG AAGAAGGCAT GAGTTAGTCA
1561TTGCCTGGGA GCCAGTATCT GAAGAGTTTC AGAATGGGGA AGGCTTCGGC TATATTGTGG
1621CTTTCAGACC CAATGGAACA CGTGGCTGGA AGGAAAAAAT GGTGACATCC TCTGAAGCTT
1681CCAAATTCAT TTATCGAGAT GAAAGTGTCC CTCCTCTTAC TCCCTTTGAA GTGAAAGTTG
1741GCGTTTATAA CAATAAAGGA GATGGGCCTT TTAGTCAAAT TGTGGTCATC TGTTCAGCTG
1801AAGGAGAACC CAGTGCTGCT CCCACAGATG TCAAGGCGAC AAGTGTGTCT GTGTCAGAGA
1861TTCTTGTTGC ATGGAAACAC ATTAAAGAGA GTCTAGGAAG ACCACAGGGA TTTGAGGTAT
1921TGCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca
1981acgaac

Download FASTA (ORF) (Full)