Construct: ORF ccsbBroadEn_12052

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008212.1_s300c1, BRDN0000396020
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR44 (54521)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54521 WDR44 WD repeat domain 44 XM_017029600.2 99.8% 99.8% 16A>G;603C>T;1851T>C
2 human 54521 WDR44 WD repeat domain 44 XM_011531353.3 70% 70% (many diffs)
3 human 54521 WDR44 WD repeat domain 44 NM_019045.5 68.1% 68.1% (many diffs)
4 human 54521 WDR44 WD repeat domain 44 NM_001184965.2 67.2% 67.2% (many diffs)
5 human 54521 WDR44 WD repeat domain 44 NM_001184966.1 62.8% 62.8% (many diffs)
6 mouse 72404 Wdr44 WD repeat domain 44 XM_011247497.2 93.1% 96.9% (many diffs)
7 mouse 72404 Wdr44 WD repeat domain 44 NM_001305675.1 63.4% 66% (many diffs)
8 mouse 72404 Wdr44 WD repeat domain 44 NM_175180.3 63.4% 66% (many diffs)
9 mouse 72404 Wdr44 WD repeat domain 44 XM_006527700.3 63.4% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1935
ORF length:
1869
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TTCAGAAAGT GCGGTTAAGG ATTCTCAGCC TTCTCTTGAT TTGGCAAGTG
121CTACCAGTGG AGATAAAATA GTTACCGCCC AGGAAAATGG AAAAGCACCT GATGGGCAGA
181CTGTAGCAGG TGAAGTGATG GGCCCTCAGA GACCTAGATC CAACTCTGGG AGAGAGCTTA
241CTGATGAGGA AATTTTAGCC AGTGTAATGA TTAAGAACCT GGATACTGGA GAAGAAATAC
301CTTTGAGTCT TGCAGAAGAG AAACTACCAA CAGGCATTAA TCCTCTCACT CTACACATCA
361TGAGAAGGAC AAAAGAATAT GTAAGTAATG ACGCGGCACA GTCAGATGAT GAAGAGAAGT
421TACAGTCTCA GCCAACAGAT ACTGATGGTG GAAGGTTAAA ACAGAAAACG ACTCAACTAA
481AGAAGTTTCT TGGAAAATCA GTAAAGAGAG CAAAGCACCT TGCTGAGGAA TATGGTGAAC
541GTGCTATAAA TAAAGTTAAA AGTGTTAGAG ATGAAGTGTT TCATACTGAT CAAGATGATC
601CTTCATCAAG TGATGATGAA GGAATGCCAT ACACAAGACC AGTTAAATTC AAAGCAGCAC
661ACGGTTTTAA AGGACCTTAT GATTTTGATC AGATCAAAGT GGTGCAAGAT CTTAGTGGTG
721AACATATGGG AGCTGTTTGG ACCATGAAAT TTTCTCACTG TGGCCGATTA CTTGCCTCAG
781CTGGACAAGA CAATGTAGTG AGAATATGGG CTTTAAAAAA TGCTTTTGAC TATTTCAACA
841ATATGCGAAT GAAATACAAT ACTGAAGGAC GTGTGTCCCC ATCACCCTCT CAGGAAAGTC
901TAAGTTCATC AAAATCGGAT ACAGATACAG GGGTATGCAG TGGAACTGAT GAAGACCCTG
961ATGATAAAAA CGCACCCTTT CGGCAACGGC CATTTTGCAA ATATAAAGGA CATACTGCTG
1021ATCTCCTTGA TCTTTCATGG TCTAAAAACT ACTTTCTTCT TTCTTCTTCA ATGGATAAAA
1081CAGTCAGATT ATGGCACATT TCTCGAAGAG AATGCCTTTG CTGTTTTCAA CATATAGATT
1141TTGTCACTGC CATAGCTTTT CATCCAAGAG ATGACAGGTA TTTTCTAAGT GGGTCTTTGG
1201ATGGAAAGCT CCGCCTTTGG AACATACCTG ACAAAAAAGT GGCTTTGTGG AATGAAGTAG
1261ATGGTCAGAC AAAATTGATC ACAGCTGCAA ATTTCTGTCA GAATGGCAAA TATGCAGTGA
1321TTGGGACATA TGATGGCAGA TGTATTTTCT ATGATACAGA GCATTTGAAA TACCATACAC
1381AAATACATGT CCGATCTACT AGAGGGCGCA ACAAGGTTGG AAGAAAAATT ACTGGCATTG
1441AGCCTTTACC TGGAGAAAAT AAGATATTGG TAACCTCAAA TGACTCCAGA ATCAGACTAT
1501ATGATTTGAG AGATTTGTCA CTATCCATGA AGTATAAGGG TTACGTCAAT AGCAGCAGCC
1561AGATCAAAGC AAGTTTCAGC CATGATTTTA CTTACCTCGT TAGTGGTTCA GAAGATAAGT
1621ATGTTTATAT CTGGAGTACC TACCATGACC TAAGCAAGTT TACTTCAGTC AGGAGAGATC
1681GTAATGACTT CTGGGAAGGT ATTAAAGCCC ACAATGCAGT TGTTACATCA GCCATCTTTG
1741CACCAAACCC AAGTTTGATG TTATCTTTGG ATGTGCAATC TGAAAAATCA GAAGGGAACG
1801AGAAAAGTGA AGATGCTGAA GTTTTGGATG CCACACCTTC TGGTATTATG AAGACAGATA
1861ACACAGAAGT TCTTCTCTCT GCTGACTTCA CTGGAGCAAT CAAAGTGTTT GTTAACAAAA
1921GAAAAAATGT ATCTTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1981tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)