Construct: ORF ccsbBroadEn_12084
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009488.1_s300c1, BRDN0000456393
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MBTD1 (54799)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524933.2 | 77.2% | 75.3% | (many diffs) |
| 2 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_017024782.1 | 77.2% | 75.3% | (many diffs) |
| 3 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524931.2 | 73.4% | 71.6% | (many diffs) |
| 4 | human | 54799 | MBTD1 | mbt domain containing 1 | NM_017643.3 | 64.6% | 63.3% | (many diffs) |
| 5 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_005257468.5 | 62.4% | 61.1% | (many diffs) |
| 6 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_005257467.5 | 62.2% | 60.9% | (many diffs) |
| 7 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524929.2 | 58.9% | 57.5% | (many diffs) |
| 8 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524930.1 | 58.9% | 57.5% | (many diffs) |
| 9 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524925.1 | 58.7% | 57.3% | (many diffs) |
| 10 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524926.3 | 58.7% | 57.3% | (many diffs) |
| 11 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524928.2 | 58.7% | 57.3% | (many diffs) |
| 12 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524924.2 | 57% | 55.7% | (many diffs) |
| 13 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524923.2 | 56.9% | 55.6% | (many diffs) |
| 14 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524922.2 | 56.8% | 55.5% | (many diffs) |
| 15 | human | 54799 | MBTD1 | mbt domain containing 1 | XR_934491.2 | 56.3% | 1_782del;2013_2183del | |
| 16 | human | 54799 | MBTD1 | mbt domain containing 1 | XR_001752546.1 | 52.6% | (many diffs) | |
| 17 | human | 54799 | MBTD1 | mbt domain containing 1 | XR_934492.2 | 52.5% | 1_782del;1660_1661ins83;1930_2100del | |
| 18 | human | 54799 | MBTD1 | mbt domain containing 1 | XR_001752545.1 | 49.3% | (many diffs) | |
| 19 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524936.1 | 46.3% | 43.7% | 1_492del;1222_1223ins148;1290_1291ins284 |
| 20 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524935.3 | 44.5% | 42% | 1_561del;1291_1292ins148;1359_1360ins284 |
| 21 | human | 54799 | MBTD1 | mbt domain containing 1 | XM_011524934.2 | 44.4% | 41.9% | 1_567del;1297_1298ins148;1365_1366ins284 |
| 22 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314204.1 | 82.3% | 84.7% | (many diffs) |
| 23 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314205.1 | 82.3% | 84.7% | (many diffs) |
| 24 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314206.1 | 82.3% | 84.7% | (many diffs) |
| 25 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531912.3 | 72.6% | 74.5% | (many diffs) |
| 26 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314203.1 | 72.6% | 74.5% | (many diffs) |
| 27 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | NM_001346525.1 | 61.4% | 63.3% | (many diffs) |
| 28 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | NM_134012.3 | 60.5% | 62.4% | (many diffs) |
| 29 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531910.3 | 60.5% | 62.4% | (many diffs) |
| 30 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314202.1 | 59.8% | 61.6% | (many diffs) |
| 31 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531909.3 | 59.6% | 61.4% | (many diffs) |
| 32 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531908.3 | 57% | 58.8% | (many diffs) |
| 33 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531907.3 | 56.8% | 58.6% | (many diffs) |
| 34 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531904.3 | 55.1% | 56.7% | (many diffs) |
| 35 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531905.3 | 55.1% | 56.7% | (many diffs) |
| 36 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531906.2 | 55.1% | 56.7% | (many diffs) |
| 37 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531894.3 | 54.9% | 56.5% | (many diffs) |
| 38 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531895.2 | 54.9% | 56.5% | (many diffs) |
| 39 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531897.3 | 54.9% | 56.5% | (many diffs) |
| 40 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531898.2 | 54.9% | 56.5% | (many diffs) |
| 41 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531899.3 | 54.9% | 56.5% | (many diffs) |
| 42 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531900.3 | 54.9% | 56.5% | (many diffs) |
| 43 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531901.3 | 54.9% | 56.5% | (many diffs) |
| 44 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531902.2 | 54.9% | 56.5% | (many diffs) |
| 45 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531903.3 | 54.9% | 56.5% | (many diffs) |
| 46 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314200.1 | 54.9% | 56.5% | (many diffs) |
| 47 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_017314201.1 | 54.9% | 56.5% | (many diffs) |
| 48 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531893.3 | 54.3% | 55.9% | (many diffs) |
| 49 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531891.3 | 53.3% | 54.9% | (many diffs) |
| 50 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531887.3 | 53.3% | 54.8% | (many diffs) |
| 51 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531889.2 | 53.3% | 54.8% | (many diffs) |
| 52 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531885.3 | 52.2% | 53.7% | (many diffs) |
| 53 | mouse | 103537 | Mbtd1 | mbt domain containing 1 | XM_006531884.3 | 52% | 53.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1299
- ORF length:
- 1230
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGACCTGC TGGGGTGATA TCTCAGAAAA TGTGAGAGTA GAAGTTCCCA 121 ATACAGACTG CAGCCTACCT ACCAAAGTCT TCTGGATTGC TGGAATTGTA AAATTAGCAG 181 GTTACAATGC CCTTTTAAGA TATGAAGGAT TTGAAAATGA CTCTGGTCTG GACTTCTGGT 241 GCAATATATG TGGTTCTGAT ATCCATCCAG TTGGTTGGTG TGCAGCCAGC GGAAAACCTC 301 TTGTTCCTCC TAGAACTATT CAGCATAAAT ATACAAACTG GAAAGCTTTT CTAGTGAAAC 361 GACTTACTGG TGCCAAAACA CTGCCTCCTG ATTTCTCCCA AAAGGTTTCA GAGAGTATGC 421 AGTATCCTTT CAAACCTTGC ATGAGAGTAG AAGTGGTTGA CAAGAGGCAT TTGTGTCGAA 481 CACGAGTAGC AGTGGTGGAA AGTGTAATTG GAGGAAGATT AAGACTAGTG TATGAAGAAA 541 GCGAAGATAG AACAGATGAC TTCTGGTGCC ATATGCACAG CCCATTAATA CATCATATTG 601 GTTGGTCTCG AAGCATAGGT CATCGATTCA AAAGATCTGA TATTACAAAG AAACAGGATG 661 GACATTTTGA TACACCACCA CATTTATTTG CTAAGGTAAA AGAAGTAGAC CAGAGTGGGG 721 AATGGTTCAA GGAAGGAATG AAATTGGAAG CTATAGACCC ATTAAATCTT TCTACAATAT 781 GTGTCGCAAC CATTAGAAAG GTGCTAGCTG ACGGATTCCT GATGATTGGG ATCGATGGCT 841 CAGAAGCAGC AGACGGATCT GACTGGTTCT GTTACCATGC AACCTCTCCT TCTATTTTCC 901 CTGTCGGTTT CTGTGAAATT AACATGATTG AACTTACTCC ACCCAGAGGT TACACAAAAC 961 TTCCTTTTAA ATGGTTTGAC TACCTCAGGG AAACTGGCTC CATTGCAGCA CCAGTAAAAC 1021 TATTTAATAA GGATGTTCCA AATCACGGAT TTCGTGTAGG AATGAAATTA GAAGCAGTAG 1081 ATCTCATGGA GCCACGTTTA ATATGTGTAG CCACAGTAAC TCGAATTATT CATCGTCTCT 1141 TGAGGATACA TTTTGATGGA TGGGAAGAAG AGTATGATCA GTGGGTAGAC TGTGAGTCAC 1201 CTGACCTCTA TCCTGTAGGG TGGTGTCAGT TAACTGGATA TCAACTACAG CCTCCAGCAT 1261 CACAGTGTAA GTTGGTATAC AGAAAAGGTG TCCTTTTGTT GCCAACTTTC TTGTACAAAG 1321 TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac