Construct: ORF ccsbBroadEn_12152
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005514.1_s300c1, BRDN0000395721
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OXR1 (55074)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013594.2 | 100% | 100% | |
| 2 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013593.2 | 96.5% | 96.5% | 1691_1771del |
| 3 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013592.1 | 94.3% | 94.3% | 1_54del;1745_1825del |
| 4 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013591.1 | 94.2% | 94.2% | 1_57del;1748_1828del |
| 5 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013590.1 | 94% | 94% | 1_63del;1754_1834del |
| 6 | human | 55074 | OXR1 | oxidation resistance 1 | NM_181354.4 | 90.3% | 90.3% | 1_243del |
| 7 | human | 55074 | OXR1 | oxidation resistance 1 | NM_018002.3 | 89.5% | 89.5% | 1_264del |
| 8 | human | 55074 | OXR1 | oxidation resistance 1 | XM_006716595.2 | 89.4% | 89.4% | 1_267del |
| 9 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013589.2 | 87.5% | 87.5% | 1_243del;1934_2014del |
| 10 | human | 55074 | OXR1 | oxidation resistance 1 | NM_001198533.1 | 86.8% | 86.8% | 1_264del;1955_2035del |
| 11 | human | 55074 | OXR1 | oxidation resistance 1 | NM_001198532.1 | 86.7% | 86.7% | 1_267del;1958_2038del |
| 12 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013599.2 | 80% | 72% | 0_1ins268;143_144ins185 |
| 13 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013600.2 | 80% | 72% | 0_1ins268;143_144ins185 |
| 14 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013595.2 | 77.3% | 69.6% | 0_1ins268;143_144ins185;1238_1318del |
| 15 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013596.1 | 77.3% | 69.6% | 0_1ins268;143_144ins185;1238_1318del |
| 16 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013597.1 | 77.3% | 69.6% | 0_1ins268;143_144ins185;1238_1318del |
| 17 | human | 55074 | OXR1 | oxidation resistance 1 | XM_017013598.2 | 77.3% | 69.6% | 0_1ins268;143_144ins185;1238_1318del |
| 18 | human | 55074 | OXR1 | oxidation resistance 1 | XR_001745546.1 | 67.3% | 1_361del;2052_2251del;2470_2471ins365 | |
| 19 | human | 55074 | OXR1 | oxidation resistance 1 | XR_001745547.1 | 63.9% | 1_361del;2054_2172del;2242_2243ins512 | |
| 20 | human | 55074 | OXR1 | oxidation resistance 1 | XR_001745548.1 | 47.1% | 1_591del;2282_2481del;3066_4821del | |
| 21 | human | 55074 | OXR1 | oxidation resistance 1 | NM_001198534.1 | 30% | 27.2% | (many diffs) |
| 22 | human | 55074 | OXR1 | oxidation resistance 1 | NM_001198535.1 | 27.4% | 25.3% | (many diffs) |
| 23 | mouse | 170719 | Oxr1 | oxidation resistance 1 | XM_006520531.3 | 28% | 26.5% | (many diffs) |
| 24 | mouse | 170719 | Oxr1 | oxidation resistance 1 | NM_001130164.1 | 25.2% | 24.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2340
- ORF length:
- 2274
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TTTTCAGAAA CCTAAAGGGA CTATTGAGTA TACTGTTGAA TCAAGGGATT 121 CTTTGAATAG CATAGCCCTG AAGTTTGATA CAACACCTAA CGAACTTGTT CAATTAAATA 181 AGTTATTCTC CCGAGCAGTT GTTACTGGAC AGGTTCTGTA TGTTCCTGAT CCTGAATATG 241 TCTCCAGTGT TGAGAGCTCT CCATCTCTAA GCCCCGTAAG TCCTCTGTCA CCAACATCAT 301 CTGAGGCTGA ATTTGATAAG ACCACTAATC CTGATGTCCA TCCAACAGAA GCAACTCCCT 361 CATCTACTTT CACTGGTATT CGACCTGCAC GAGTTGTATC TTCAACTTCT GAGGAGGAGG 421 AAGCATTTAC TGAGAAATTT CTTAAAATTA ATTGCAAATA TATTACCAGT GGCAAGGGCA 481 CAGTCAGTGG TGTGCTGCTA GTTACACCAA ATAATATAAT GTTTGATCCA CATAAAAATG 541 ACCCTTTGGT TCAAGAGAAT GGCTGTGAGG AATATGGCAT CATGTGTCCA ATGGAAGAGG 601 TGATGTCAGC TGCAATGTAC AAAGAAATTT TGGATAGCAA AATAAAGGAA TCTTTACCCA 661 TAGATATAGA TCAGCTATCA GGAAGGGACT TCTGCCATTC AAAGAAAATG ACAGGAAGTA 721 ACACTGAGGA AATAGACTCA AGAATCCGAG ATGCAGGTAA TGATAGTGCC AGCACTGCTC 781 CTAGGAGCAC TGAGGAGTCT CTTTCTGAAG ATGTGTTCAC AGAATCAGAA CTTTCCCCTA 841 TACGAGAGGA GCTTGTATCT TCAGATGAAC TGCGACAAGA TAAATCTTCT GGTGCGTCAT 901 CAGAATCTGT GCAAACTGTC AATCAGGCTG AAGTAGAAAG TCTGACAGTC AAATCAGAAT 961 CTACTGGTAC TCCTGGTCAC TTAAGATCTG ATACTGAACA TTCTACAAAT GAAGTTGGGA 1021 CTTTATGTCA TAAAACTGAT TTAAATAATC TTGAAATGGC CATTAAGGAA GATCAGATTG 1081 CAGATAACTT TCAAGGAATA TCAGGTCCTA AAGAAGACAG CACAAGTATA AAAGGTAATT 1141 CAGACCAGGA TTCTTTTCTT CATGAGAATT CGTTACACCA AGAAGAGAGT CAAAAAGAAA 1201 ATATGCCTTG TGGGGAAACA GCAGAATTTA AACAAAAGCA AAGTGTTAAC AAAGGAAAAC 1261 AAGGAAAGGA GCAAAATCAG GACTCACAGA CAGAGGCAGA AGAGCTACGC AAACTTTGGA 1321 AAACCCATAC TATGCAACAA ACTAAACAGC AAAGGGAAAA TATTCAACAA GTGTCACAAA 1381 AAGAAGCTAA GCATAAAATT ACATCTGCTG ATGGACACAT AGAAAGTTCT GCACTTTTAA 1441 AAGAAAAGCA AAGGCATCGA TTACATAAGT TCTTGTGTCT CAGAGTTGGA AAACCAATGA 1501 GGAAAACGTT TGTATCTCAA GCAAGTGCTA CAATGCAACA GTATGCACAG AGAGATAAGA 1561 AACATGAATA TTGGTTTGCT GTGCCACAAG AAAGGACAGA TCACTTGTAT GCCTTCTTCA 1621 TTCAGTGGAG TCCAGAAATA TATGCAGAAG ATACTGGCGA ATATACCAGA GAACCTGGAT 1681 TTATAGTAGT AAAAAAGATT GAGGAGTCTG AAACAATTGA GGATTCTAGT AATCAAGCAG 1741 CAGCCAGAGA ATGGGAGATT ACTACAAGGG AAGACATAAA TTCAAAGCAG GTTGCTACAG 1801 TGAAAGCAGA CCTGGAGTCT GAATCTTTTC GACCAAACCT AAGTGATCCC AGTGAACTTT 1861 TACTGCCAGA TCAAATTGAA AAGCTTACCA AGCATCTTCC ACCAAGAACA ATTGGCTATC 1921 CATGGACTCT TGTTTATGGT ACTGGAAAAC ATGGCACAAG CTTGAAAACT CTTTATCGAA 1981 CAATGACAGG TTTAGACACC CCAGTGCTGA TGGTGATTAA AGACAGTGAT GGACAGGTTT 2041 TTGGTGCGTT AGCATCTGAG CCACTGAAAG TGAGTGATGG CTTTTATGGT ACTGGAGAGA 2101 CCTTTGTTTT TACATTCTGT CCGGAGTTTG AGGTCTTTAA GTGGACAGGA GATAATATGT 2161 TTTTTATCAA AGGAGACATG GATTCACTAG CTTTCGGTGG TGGAGGAGGA GAATTTGCGC 2221 TTTGGCTTGA TGGAGATCTC TACCATGGAA GAAGCCATTC TTGTAAAACG TTTGGGAATC 2281 GTACACTTTC TAAGAAGGAA GATTTCTTTA TCCAAGATAT TGAAATCTGG GCTTTTGAAT 2341 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2401 acgaac