Transcript: Human NM_001198534.1

Homo sapiens oxidation resistance 1 (OXR1), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
OXR1 (55074)
Length:
2635
CDS:
138..869

Additional Resources:

NCBI RefSeq record:
NM_001198534.1
NBCI Gene record:
OXR1 (55074)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001198534.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000160280 CGTACACTTTCTAAGAAGGAA pLKO.1 807 CDS 100% 3.000 4.200 N OXR1 n/a
2 TRCN0000417847 ATTAGTCTGTATCACCATTTA pLKO_005 979 3UTR 100% 13.200 9.240 N OXR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001198534.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12152 pDONR223 100% 30% 27.2% None (many diffs) n/a
2 ccsbBroad304_12152 pLX_304 0% 30% 27.2% V5 (many diffs) n/a
3 TRCN0000479891 ATGGAGTACCAACCTGCCATGTTC pLX_317 19% 30% 27.2% V5 (many diffs) n/a
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