Transcript: Human XR_001745547.1

PREDICTED: Homo sapiens oxidation resistance 1 (OXR1), transcript variant X9, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OXR1 (55074)
Length:
2242
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001745547.1
NBCI Gene record:
OXR1 (55074)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001745547.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432951 ACCTGGATTTATAGTAGTAAA pLKO_005 1969 3UTR 100% 13.200 18.480 N OXR1 n/a
2 TRCN0000158922 CCTAACGAACTTGTTCAATTA pLKO.1 452 3UTR 100% 13.200 18.480 N OXR1 n/a
3 TRCN0000161574 GCAGAAGATACTGGCGAATAT pLKO.1 1940 3UTR 100% 13.200 18.480 N OXR1 n/a
4 TRCN0000412543 CAATTGAGGATTCTAGTAATC pLKO_005 2010 3UTR 100% 10.800 15.120 N OXR1 n/a
5 TRCN0000424122 GAATCCGAGATGCAGGTAATG pLKO_005 1038 3UTR 100% 10.800 15.120 N OXR1 n/a
6 TRCN0000160648 CCCATACTATGCAACAAACTA pLKO.1 1620 3UTR 100% 5.625 4.500 N OXR1 n/a
7 TRCN0000160430 CCATAGATATAGATCAGCTAT pLKO.1 954 3UTR 100% 4.950 3.465 N OXR1 n/a
8 TRCN0000159728 GCATCGATTACATAAGTTCTT pLKO.1 1750 3UTR 100% 4.950 3.465 N OXR1 n/a
9 TRCN0000159799 GCCATTAAGGAAGATCAGATT pLKO.1 1355 3UTR 100% 4.950 3.465 N OXR1 n/a
10 TRCN0000162084 CCTCATCTACTTTCACTGGTA pLKO.1 654 3UTR 100% 2.640 1.848 N OXR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001745547.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12152 pDONR223 100% 63.9% None 1_361del;2054_2172del;2242_2243ins512 n/a
2 ccsbBroad304_12152 pLX_304 0% 63.9% V5 1_361del;2054_2172del;2242_2243ins512 n/a
3 TRCN0000479891 ATGGAGTACCAACCTGCCATGTTC pLX_317 19% 63.9% V5 1_361del;2054_2172del;2242_2243ins512 n/a
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