Transcript: Human XM_017013590.1

PREDICTED: Homo sapiens oxidation resistance 1 (OXR1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OXR1 (55074)
Length:
4211
CDS:
170..2590

Additional Resources:

NCBI RefSeq record:
XM_017013590.1
NBCI Gene record:
OXR1 (55074)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013590.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432951 ACCTGGATTTATAGTAGTAAA pLKO_005 1840 CDS 100% 13.200 18.480 N OXR1 n/a
2 TRCN0000158922 CCTAACGAACTTGTTCAATTA pLKO.1 323 CDS 100% 13.200 18.480 N OXR1 n/a
3 TRCN0000161574 GCAGAAGATACTGGCGAATAT pLKO.1 1811 CDS 100% 13.200 18.480 N OXR1 n/a
4 TRCN0000412543 CAATTGAGGATTCTAGTAATC pLKO_005 1881 CDS 100% 10.800 15.120 N OXR1 n/a
5 TRCN0000424122 GAATCCGAGATGCAGGTAATG pLKO_005 909 CDS 100% 10.800 15.120 N OXR1 n/a
6 TRCN0000160280 CGTACACTTTCTAAGAAGGAA pLKO.1 2528 CDS 100% 3.000 4.200 N OXR1 n/a
7 TRCN0000160648 CCCATACTATGCAACAAACTA pLKO.1 1491 CDS 100% 5.625 4.500 N OXR1 n/a
8 TRCN0000417847 ATTAGTCTGTATCACCATTTA pLKO_005 2700 3UTR 100% 13.200 9.240 N OXR1 n/a
9 TRCN0000160430 CCATAGATATAGATCAGCTAT pLKO.1 825 CDS 100% 4.950 3.465 N OXR1 n/a
10 TRCN0000159728 GCATCGATTACATAAGTTCTT pLKO.1 1621 CDS 100% 4.950 3.465 N OXR1 n/a
11 TRCN0000159799 GCCATTAAGGAAGATCAGATT pLKO.1 1226 CDS 100% 4.950 3.465 N OXR1 n/a
12 TRCN0000162084 CCTCATCTACTTTCACTGGTA pLKO.1 525 CDS 100% 2.640 1.848 N OXR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013590.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12152 pDONR223 100% 94% 94% None 1_63del;1754_1834del n/a
2 ccsbBroad304_12152 pLX_304 0% 94% 94% V5 1_63del;1754_1834del n/a
3 TRCN0000479891 ATGGAGTACCAACCTGCCATGTTC pLX_317 19% 94% 94% V5 1_63del;1754_1834del n/a
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