Construct: ORF ccsbBroadEn_12212

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002449.1_s300c1, BRDN0000385363
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D2 (55357)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55357 TBC1D2 TBC1 domain family member 2 NM_001267572.1 99.9% 100% 372A>G
2 human 55357 TBC1D2 TBC1 domain family member 2 XM_011518843.2 99.9% 100% 372A>G
3 human 55357 TBC1D2 TBC1 domain family member 2 XM_024447606.1 99.9% 100% 372A>G
4 human 55357 TBC1D2 TBC1 domain family member 2 XM_017014899.1 96.8% 96.8% 1_45del;417A>G
5 human 55357 TBC1D2 TBC1 domain family member 2 NM_001267571.2 50.3% 50.4% 1_1380del;1752A>G
6 human 55357 TBC1D2 TBC1 domain family member 2 NM_018421.4 49.2% 49.2% 1_1380del;1752A>G;2454_2455ins33
7 human 55357 TBC1D2 TBC1 domain family member 2 NR_051978.2 44.9% 1_1346del;1718A>G;2751_3123del
8 human 55357 TBC1D2 TBC1 domain family member 2 XR_929823.2 43.4% (many diffs)
9 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_006538049.1 84.1% 86.1% (many diffs)
10 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_030253640.1 84.1% 86.1% (many diffs)
11 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_006538048.1 56% 57.2% (many diffs)
12 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_006538050.2 50.5% 51.6% (many diffs)
13 mouse 381605 Tbc1d2 TBC1 domain family, member 2 NM_198664.3 42.6% 43.6% (many diffs)
14 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_006538046.4 42.6% 43.5% (many diffs)
15 mouse 381605 Tbc1d2 TBC1 domain family, member 2 XM_006538047.4 38.4% 37.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1470
ORF length:
1404
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGCTTACCGG ACCCAGAACT GCTTCCTCAA CTCCGAGATC CACCAGGTCA
121CAAAGATCTG GAGAAAGGTG GCTGAGAAGG AGAAGGCCCT TCTGACGAAG TGCGCCTACC
181TCCAAGCCAG AAACTGCCAG GTGGAAAGCA AGTACCTGGC CGGTCTGAGA AGGCTGCAGG
241AGGCCCTGGG GGACGAAGCC AGCGAGTGCT CAGAGCTGCT GAGGCAGCTT GTCCAGGAGG
301CACTGCAGTG GGAAGCTGGG GAGGCCTCAT CTGACAGCAT CGAGCTGAGC CCCATCAGTA
361AGTATGATGA GTACGGCTTC CTGACGGTGC CCGACTATGA GGTGGAAGAC CTGAAGCTGC
421TGGCCAAGAT CCAGGCGTTG GAGTCACGAT CCCACCACCT GCTGGGCCTC GAGGCTGTGG
481ATCGGCCGCT GAGGGAGCGC TGGGCTGCCC TGGGCGATCT TGTGCCCTCA GCCGAGCTCA
541AGCAGCTACT GCGGGCAGGA GTACCCCGTG AACACCGGCC TCGTGTCTGG AGGTGGCTGG
601TCCACCTCCG TGTCCAGCAC CTGCACACTC CAGGCTGCTA CCAGGAACTG CTGAGCCGGG
661GCCAGGCCCG CGAGCACCCT GCTGCCCGCC AGATTGAGCT GGACCTGAAC CGGACCTTCC
721CCAACAACAA ACACTTCACC TGCCCCACCT CCAGCTTCCC CGACAAGCTC CGCCGGGTGC
781TGCTGGCCTT CTCCTGGCAG AACCCCACCA TCGGCTACTG CCAGGGCCTG AACAGGCTGG
841CGGCCATTGC CCTGCTGGTC CTAGAGGAGG AGGAGAGCGC CTTCTGGTGC CTGGTGGCCA
901TTGTGGAGAC CATCATGCCC GCTGATTACT ACTGCAACAC GCTGACGGCA TCCCAGGTGG
961ACCAGCGGGT GCTCCAGGAC CTGCTCTCGG AGAAGCTGCC CAGGCTGATG GCCCATCTGG
1021GGCAGCACCA CGTGGATCTC TCCCTCGTCA CCTTCAACTG GTTCCTCGTG GTCTTTGCGG
1081ACAGTCTCAT TAGCAACATC CTCCTTCGGG TCTGGGATGC CTTCCTGTAC GAGGGGACGA
1141AGGTGGTGTT TCGCTATGCC TTGGCCATTT TCAAGTACAA CGAGAAGGAG ATCTTGAGGC
1201TACAGAATGG CCTGGAAATC TACCAGTACC TGCGCTTCTT CACCAAGACC ATCTCCAACA
1261GCCGGAAGCT GATGAACATC GCCTTCAATG ACATGAACCC CTTCCGCATG AAACAGCTGC
1321GGCAGCTGCG CATGGTCCAC CGGGAGCGGC TGGAGGCTGA GCTGCGGGAG CTGGAGCAGC
1381TTAAGGCAGA GTACCTGGAG AGGCGGGCAT CCCGGCGCAG AGCTGTGTCC GAGGGCTGTG
1441CCAGCGAGGA CGAGGTGGAG GGGGAAGCCT GCCCAACTTC CTTGTACAAA GTtggcatta
1501taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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