Construct: ORF ccsbBroadEn_12352
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010165.1_s300c1, BRDN0000385021
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RIMKLB (57494)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_011520790.1 | 99.8% | 100% | 792T>C |
| 2 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449092.1 | 99.8% | 100% | 792T>C |
| 3 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449093.1 | 99.8% | 100% | 792T>C |
| 4 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449094.1 | 99.8% | 100% | 792T>C |
| 5 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449095.1 | 92.9% | 91.8% | (many diffs) |
| 6 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001352267.1 | 74.2% | 73.9% | (many diffs) |
| 7 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001352268.1 | 74.2% | 73.9% | (many diffs) |
| 8 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001352269.1 | 74.2% | 73.9% | (many diffs) |
| 9 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001352270.1 | 74.2% | 73.9% | (many diffs) |
| 10 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001352271.1 | 74.2% | 73.9% | (many diffs) |
| 11 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_020734.4 | 74.2% | 73.9% | (many diffs) |
| 12 | human | 57494 | RIMKLB | ribosomal modification prot... | NM_001297776.2 | 74.1% | 73.9% | (many diffs) |
| 13 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_017019683.1 | 74.1% | 73.9% | (many diffs) |
| 14 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_017019684.1 | 74.1% | 73.9% | (many diffs) |
| 15 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_017019685.2 | 74.1% | 73.9% | (many diffs) |
| 16 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_017019686.1 | 74.1% | 73.9% | (many diffs) |
| 17 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_017019687.1 | 74.1% | 73.9% | (many diffs) |
| 18 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449085.1 | 74.1% | 73.9% | (many diffs) |
| 19 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449086.1 | 74.1% | 73.9% | (many diffs) |
| 20 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449087.1 | 74.1% | 73.9% | (many diffs) |
| 21 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449088.1 | 74.1% | 73.9% | (many diffs) |
| 22 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449089.1 | 74.1% | 73.9% | (many diffs) |
| 23 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449090.1 | 74.1% | 73.9% | (many diffs) |
| 24 | human | 57494 | RIMKLB | ribosomal modification prot... | XM_024449091.1 | 74.1% | 73.9% | (many diffs) |
| 25 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147945.2 | 54.9% | 1_275del;1067T>C;1197_1673del | |
| 26 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_123740.2 | 54.8% | 1_275del;1067T>C;1197_1676del | |
| 27 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147947.2 | 52.2% | 1_359del;1151T>C;1281_1760del | |
| 28 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147950.2 | 52.2% | 1_363del;1155T>C;1285_1761del | |
| 29 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147949.2 | 52.1% | 1_363del;1155T>C;1285_1764del | |
| 30 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147948.2 | 35.5% | 1_1193del;1985T>C;2115_2591del | |
| 31 | human | 57494 | RIMKLB | ribosomal modification prot... | NR_147946.2 | 35.4% | 1_1193del;1985T>C;2115_2594del | |
| 32 | mouse | 108653 | Rimklb | ribosomal modification prot... | NM_027664.1 | 66.7% | 71.6% | (many diffs) |
| 33 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241115.1 | 66.7% | 71.6% | (many diffs) |
| 34 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241116.2 | 66.7% | 71.6% | (many diffs) |
| 35 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241117.1 | 66.7% | 71.6% | (many diffs) |
| 36 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241118.2 | 66.7% | 71.6% | (many diffs) |
| 37 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241119.1 | 66.7% | 71.6% | (many diffs) |
| 38 | mouse | 108653 | Rimklb | ribosomal modification prot... | XM_011241120.1 | 53.8% | 57.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 987
- ORF length:
- 921
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG TAGTTCTGTG GCTGCCAAGT TGTGGTTTTT GACAGATCGT CGCATCAGGG 121 AAGACTATCC TCAAAAAGAG ATTTTACGAG CATTGAAGGC CAAATGTTGT GAGGAGGAAC 181 TGGACTTTAG GGCTGTGGTG ATGGATGAGG TGGTGCTGAC AATCGAGCAA GGAAACCTGG 241 GTCTGCGGAT CAATGGAGAG CTAATCACTG CCTACCCACA AGTGGTGGTA GTCAGAGTAC 301 CAACCCCTTG GGTGCAAAGT GATAGTGACA TCACTGTTTT GCGCCATCTA GAGAAGATGG 361 GATGTCGGTT AATGAACCGA CCTCAAGCCA TCCTGAACTG CGTTAATAAG TTCTGGACAT 421 TTCAAGAGTT GGCTGGCCAT GGTGTTCCTC TGCCGGATAC TTTCTCTTAT GGTGGCCACG 481 AAAATTTTGC TAAAATGATT GATGAGGCTG AAGTTCTGGA GTTCCCAATG GTAGTAAAGA 541 ATACGCGGGG TCACAGAGGT AAAGCTGTTT TCTTGGCTCG AGATAAGCAC CATTTGGCTG 601 ATCTAAGCCA TCTTATTCGC CATGAAGCGC CATACCTGTT CCAGAAGTAT GTTAAAGAGT 661 CTCATGGACG GGATGTACGT GTCATTGTCG TGGGAGGCCG TGTGGTTGGC ACCATGTTAC 721 GTTGTTCAAC AGATGGGAGA ATGCAAAGCA ACTGCTCATT AGGTGGTGTG GGGATGATGT 781 GCTCATTGAG TGAACAAGGG AAGCAGCTAG CTATCCAGGT GTCTAATATC CTGGGGATGG 841 ATGTGTGTGG CATTGACCTG CTGATGAAAG ATGACGGCTC CTTCTGCGTC TGTGAGGCCA 901 ATGCAAATCC TTTTCAGGAG CCAAAAAAAC AAATACAAAC AAACAAAAAA ATACCCAGAG 961 AAAAAACTTT CCTTCTTCCC CCTTCCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1021 gaaagcattg cttatcaatt tgttgcaacg aac