Transcript: Human NR_147948.2

Homo sapiens ribosomal modification protein rimK like family member B (RIMKLB), transcript variant 12, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
RIMKLB (57494)
Length:
2591
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_147948.2
NBCI Gene record:
RIMKLB (57494)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_147948.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000140577 GCGGATCAATGGAGAGCTAAT pLKO.1 1373 3UTR 100% 10.800 15.120 N RIMKLB n/a
2 TRCN0000144733 GCTGATCTAAGCCATCTTATT pLKO.1 1725 3UTR 100% 13.200 10.560 N RIMKLB n/a
3 TRCN0000144365 CCCAATAATGCAGCTGTATAA pLKO.1 2176 3UTR 100% 13.200 9.240 N RIMKLB n/a
4 TRCN0000144937 GAAGAGATAGAGCATGACATA pLKO.1 2326 3UTR 100% 4.950 3.465 N RIMKLB n/a
5 TRCN0000140009 GCTGACAATCGAGCAAGGAAA pLKO.1 1343 3UTR 100% 4.950 3.465 N RIMKLB n/a
6 TRCN0000144832 GCAGCTGTATAATGAATGGTA pLKO.1 2185 3UTR 100% 3.000 2.100 N RIMKLB n/a
7 TRCN0000139503 CTGAAGTTCTGGAGTTCCCAA pLKO.1 1636 3UTR 100% 2.640 1.848 N RIMKLB n/a
8 TRCN0000140297 GATGAAAGATGACGGCTCCTT pLKO.1 1991 3UTR 100% 2.640 1.848 N RIMKLB n/a
9 TRCN0000140736 GCTCATTGAGTGAACAAGGGA pLKO.1 1909 3UTR 100% 0.750 0.525 N RIMKLB n/a
10 TRCN0000121702 CAGGACTAAGATTCCTGCATT pLKO.1 2378 3UTR 100% 0.495 0.347 N RIMKLB n/a
11 TRCN0000122756 CGGTTAATGAACCGACCTCAA pLKO.1 1494 3UTR 100% 0.405 0.284 N RIMKLB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_147948.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12352 pDONR223 100% 35.5% None 1_1193del;1985T>C;2115_2591del n/a
2 ccsbBroad304_12352 pLX_304 0% 35.5% V5 1_1193del;1985T>C;2115_2591del n/a
3 TRCN0000472196 TGGTCCTCCGCTTATAAGAGGATC pLX_317 57.9% 35.5% V5 1_1193del;1985T>C;2115_2591del n/a
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