Construct: ORF ccsbBroadEn_12410
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017590.1_s300c1, BRDN0000397172
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF410 (57862)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57862 | ZNF410 | zinc finger protein 410 | NM_001242926.2 | 100% | 100% | |
| 2 | human | 57862 | ZNF410 | zinc finger protein 410 | NM_021188.3 | 90.1% | 90.1% | 1128_1268del |
| 3 | human | 57862 | ZNF410 | zinc finger protein 410 | NM_001242924.2 | 82.4% | 81% | (many diffs) |
| 4 | human | 57862 | ZNF410 | zinc finger protein 410 | NM_001242927.2 | 74.8% | 74.8% | 166_167ins219;909_1049del |
| 5 | human | 57862 | ZNF410 | zinc finger protein 410 | NR_040251.2 | 48% | (many diffs) | |
| 6 | human | 57862 | ZNF410 | zinc finger protein 410 | NM_001242928.2 | 44.9% | 35.4% | (many diffs) |
| 7 | mouse | 52708 | Zfp410 | zinc finger protein 410 | NM_144833.3 | 82% | 85.1% | (many diffs) |
| 8 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XM_006516085.2 | 82% | 85.1% | (many diffs) |
| 9 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XM_006516086.3 | 82% | 85.1% | (many diffs) |
| 10 | mouse | 52708 | Zfp410 | zinc finger protein 410 | NM_001252582.1 | 72.7% | 74.7% | (many diffs) |
| 11 | mouse | 52708 | Zfp410 | zinc finger protein 410 | NM_001252583.1 | 71.5% | 74.1% | (many diffs) |
| 12 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XM_006516087.3 | 65.3% | 56.2% | (many diffs) |
| 13 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XM_017315135.1 | 65.3% | 56.2% | (many diffs) |
| 14 | mouse | 52708 | Zfp410 | zinc finger protein 410 | NR_045546.1 | 42.6% | (many diffs) | |
| 15 | mouse | 52708 | Zfp410 | zinc finger protein 410 | NR_045615.1 | 37.2% | (many diffs) | |
| 16 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XR_381533.3 | 35.1% | (many diffs) | |
| 17 | mouse | 52708 | Zfp410 | zinc finger protein 410 | XR_001780468.1 | 32.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1359
- ORF length:
- 1293
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT ATCAGATGAG TTAGAATCCA AACCAGAGCT CCTGGTACAG TTTGTTCAGA 121 ATACGTCCAT CCCATTGGGA CAGGGGCTTG TAGAATCAGA AGCTAAAGAT ATTACTTGCT 181 TGTCCCTCCT TCCCGTGACT GAAGCCTCAG AATGCAGTCG GCTAATGTTA CCAGATGATA 241 CTACAAATCA TTCTAACTCC TCCAAGGAGG TCCCTTCCTC AGCTGTTTTG AGAAGCCTTC 301 GGGTGAATGT GGGTCCAGAC GGAGAGGAGA CGAGAGCTCA GACTGTACAG AAATCCCCGG 361 AGTTTTTGTC CACTTCAGAG TCTTCTAGCT TGTTGCAAGA TCTACAGCCA AGTGATAGCA 421 CTTCTTTTAT TCTTCTTAAC CTAACAAGAG CAGGTCTGGG CTCTTCAGCT GAGCACTTAG 481 TGTTTGTACA GGATGAGGCA GAAGATTCAG GGAATGATTT CCTCTCCAGT GAGAGCACAG 541 ACAGTAGCAT TCCATGGTTC CTCCGGGTTC AGGAGTTGGC CCATGACAGT TTGATTGCTG 601 CTACTCGTGC ACAACTGGCA AAGAATGCAA AAACCAGCAG CAATGGAGAA AATGTCCACC 661 TTGGTTCTGG TGATGGGCAG TCAAAAGATT CTGGGCCCCT TCCTCAAGTG GAAAAGAAGC 721 TCAAGTGTAC AGTTGAAGGT TGTGACCGGA CATTTGTATG GCCAGCTCAC TTTAAATACC 781 ACCTCAAGAC TCATCGAAAT GACCGCTCCT TCATCTGTCC TGCAGAAGGT TGTGGGAAAA 841 GCTTCTATGT GCTGCAGAGG CTGAAGGTGC ACATGAGGAC CCACAATGGA GAGAAGCCCT 901 TTATGTGCCA TGAGTCTGGC TGTGGTAAGC AGTTTACTAC AGCTGGAAAC CTGAAGAACC 961 ACCGGCGCAT CCACACAGGA GAGAAACCTT TCCTTTGTGA AGCCCAAGGA TGTGGCCGTT 1021 CCTTTGCTGA GTATTCTAGC CTCCGAAAAC ATCTGGTGGT TCACTCAGGA GAGAAGCCTC 1081 ATCAGTGCCA AGTCTGTGGG AAGACCTTCT CTCAGAGTGG AAGCAGGAAT GTGCATATGA 1141 GAAAGCATCA CCTGCAGCTG GGAGCAGCTG GGAGTCAAGA GCAGGAGCAA ACTGAGGTGC 1201 TTGCTGAAGG ATCCCCACGT TCCCTGTCTT CAGTGCCTGA TGTGACACAT CACCTGGTGA 1261 CCATGCAGTC AGGGAGGCAA TCATATGAAG TTTCTGTCTT AACTGCAGTA AATCCACAAG 1321 AGTTACTAAA CCAAGGAGAT TTAACTGAAA GACGGACATG CCCAACTTTC TTGTACAAAG 1381 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac