Transcript: Human XM_017009858.2

PREDICTED: Homo sapiens multiple C2 and transmembrane domain containing 1 (MCTP1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MCTP1 (79772)
Length:
4839
CDS:
775..2880

Additional Resources:

NCBI RefSeq record:
XM_017009858.2
NBCI Gene record:
MCTP1 (79772)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009858.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416402 ATGCTGCATACTACGTTAATA pLKO_005 2249 CDS 100% 15.000 21.000 N MCTP1 n/a
2 TRCN0000430126 CATCAGAGCGGAAGGGTTAAT pLKO_005 1776 CDS 100% 13.200 18.480 N MCTP1 n/a
3 TRCN0000423696 AGATAACAGGCAACGTGATAC pLKO_005 2415 CDS 100% 10.800 15.120 N MCTP1 n/a
4 TRCN0000417053 TATAGCCCATTGAGGATATTT pLKO_005 1717 CDS 100% 15.000 10.500 N MCTP1 n/a
5 TRCN0000425973 TGAAGTGGTTGGATCTTATTT pLKO_005 1185 CDS 100% 15.000 10.500 N MCTP1 n/a
6 TRCN0000002076 CTCAGCAGCATTTCCTTTCTT pLKO.1 2943 3UTR 100% 5.625 3.938 N MCTP1 n/a
7 TRCN0000002074 CCTTTCTGGATCTGACACAAT pLKO.1 1025 CDS 100% 4.950 3.465 N MCTP1 n/a
8 TRCN0000002073 CTTTCCAGAGTCCCTTCAGAT pLKO.1 2779 CDS 100% 4.950 3.465 N MCTP1 n/a
9 TRCN0000002072 TGGGACAAAGATGCTGGGAAA pLKO.1 1492 CDS 100% 4.050 2.835 N MCTP1 n/a
10 TRCN0000435665 AGGAACGAGAGGAGATATTAA pLKO_005 1691 CDS 100% 15.000 9.000 N MCTP1 n/a
11 TRCN0000423467 TGGAACTACTTCTTGATAATA pLKO_005 2386 CDS 100% 15.000 9.000 N MCTP1 n/a
12 TRCN0000002075 CAGAAGTACATTGAAGAGGAA pLKO.1 2158 CDS 100% 2.640 1.584 N MCTP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009858.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12614 pDONR223 100% 66.9% 65.8% None (many diffs) n/a
2 ccsbBroad304_12614 pLX_304 0% 66.9% 65.8% V5 (many diffs) n/a
3 TRCN0000475853 AGTACGTAGGGAACCGATAACAAA pLX_317 17% 66.9% 65.8% V5 (many diffs) n/a
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