Construct: ORF ccsbBroadEn_12618
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009279.1_s300c1, BRDN0000396832
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC5 (79798)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79798 | ARMC5 | armadillo repeat containing 5 | NM_001105247.2 | 82.4% | 82.4% | 1_492del |
| 2 | human | 79798 | ARMC5 | armadillo repeat containing 5 | NM_001301820.1 | 79.7% | 79.7% | 1_588del |
| 3 | human | 79798 | ARMC5 | armadillo repeat containing 5 | XM_024450449.1 | 79.7% | 79.7% | 1_588del |
| 4 | human | 79798 | ARMC5 | armadillo repeat containing 5 | XM_006721091.3 | 79.2% | 79.2% | 1_588del;2093_2110del |
| 5 | human | 79798 | ARMC5 | armadillo repeat containing 5 | XM_024450448.1 | 79.2% | 79.2% | 1_588del;2093_2110del |
| 6 | human | 79798 | ARMC5 | armadillo repeat containing 5 | NM_001288767.2 | 74.8% | 74.8% | 1_777del |
| 7 | human | 79798 | ARMC5 | armadillo repeat containing 5 | NM_024742.2 | 56.3% | 51.3% | (many diffs) |
| 8 | mouse | 233912 | Armc5 | armadillo repeat containing 5 | NM_146205.2 | 68.4% | 72.3% | (many diffs) |
| 9 | mouse | 233912 | Armc5 | armadillo repeat containing 5 | XM_017322219.1 | 44.7% | 46.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2379
- ORF length:
- 2313
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GACAGACAGC ATCCAGAACC GAACGGCCCG TGCCCTGGGG AACTTAGCCA 121 TGGAACCTGA GAGCTGTGGG GACATCCACT GTGCTGGTGC TGTTCCCCTG CTTGTGGAGA 181 GCCTGACAGC CTGCCAGGAC TCGCAGTGCC TACAGAGCGT GGTGCGTGCC CTCCGTAACC 241 TGGCAGACTC ACCCCAGCAC CGCCTGGCCT TGGCACAGCA GGGAGCAGTG CGTCCGCTGG 301 CCGAGCTCCT GGCCACTGCC CCAGATGCTG CACTGACCTT AGCCCTCGTC CGTGCCCTCC 361 TGGAACTCAG CCGAGGCTGC TCCCGGGCCT GTGCTGAGCA GCTAAGTCTG GGTGGGGGAT 421 TGGGCCCACT CGTCAGCCTG GCTTCCCACC CCAAGCGGGC AGTACGCGAG GGAACCATTC 481 TGATCCTCGC CAACCTGTGT GCCCAGGGCC TGATTCGGCC TGCACTGGGC AATGCTGGTG 541 GCGTGGAGGT GCTGGTAGAT GAGCTCCGGC AGCGCCGGGA TCCTAATGGA GCTAGCCCAA 601 CCTCCCAGCA GCCCCTGGTG CGGGCTGTGT GCCTCCTATG TCGTGAGGCC ATCAACCGGG 661 CCCGACTGCG GGATGCTGGT GGCTTGGATC TACTGATGGG CCTGCTGCGG GACCCTCGTG 721 CAAGCGCATG GCACCCTCGT ATTGTGGCTG CCCTTGTGGG GTTTCTGTAT GACACTGGGG 781 CCCTGGGCCG GCTGCAGGCT CTGGGACTTG TGCCTCTCCT GGCTGGGCAG CTGTGTGGTG 841 AGGCTGGTGA GGAGGAAGAA GAGGGAAGAG AAGCTGCTTC CTGGGACTTT CCTGAGGAGA 901 GGACCCCTGA GCGGGCACAG GGTGGAAGCT TCCGGAGCCT CAGGTCGTGG CTGATCTCCG 961 AGGGCTATGC CACAGGCCCT GATGACATCT CCCCCGACTG GTCTCCTGAG CAGTGTCCGC 1021 CGGAGCCCAT GGAGCCGGCC AGCCCCGCCC CGACCCCGAC CTCGCTGCGG GCACCACGCA 1081 CCCAACGCAC TCCGGGCCGC AGCCCCGCCG CCGCCATCGA GGAGCCTTGG GGACGCGAAG 1141 GGCCAGCCCT GCTGCTGCTG TCGCGCTTTT CCCAGGCCCC TGACCCAAGT GGGGCACTTG 1201 TGACCGGCCC GGCGCTGTAC GGCCTGCTGA CCTATGTGAC CGGCGCACCG GGCCCGCCCA 1261 GCCCACGTGC ACTGCGCATT CTGTCACGCC TCACCTGCAA CCCTGCCTGC CTCGAGGCCT 1321 TCGTGCGCAG CTATGGCGCG GCGCTGCTGC GGGCCTGGCT GGTGCTGGGG GTGGCGCCTG 1381 ACGATTGGCC GGCACCACGT GCCCGGCCCA CTCTCCACAG CCGGCACCGA GAGCTGGGGG 1441 AGAGGCTACT GCAGAACCTG ACGGTTCAGG CTGAGTCGCC CTTTGGGGTT GGGGCCCTGA 1501 CGCACCTGCT GCTCTCTGGG AGCCCTGAGG ACCGAGTGGC CTGCGCGCTG ACCCTGCCCT 1561 TCATCTGCCG GAAGCCCTCT CTGTGGCGCC GGCTGCTTCT GGAGCAGGGT GGTCTCCGGC 1621 TCCTCCTTGC GGCGCTGACC CGGCCGGCCC CACACCCGCT CTTCCTCTTC TTTGCCGCGG 1681 ACTCCCTTTC CTGCCTCCAA GACCTGGTGT CTCCCACTGT GAGCCCAGCT GTCCCACAGG 1741 CAGTCCCCAT GGACCTAGAC TCACCTTCCC CTTGCCTCTA TGAACCTCTG CTGGGCCCAG 1801 CCCCTGTCCC AGCTCCCGAC CTGCACTTCC TGCTGGACTC AGGCCTCCAG CTCCCTGCCC 1861 AGCGAGCGGC CTCAGCCACC GCCTCCCCTT TCTTCCGGGC CCTGCTGTCA GGCAGCTTTG 1921 CAGAAGCCCA GATGGACCTG GTGCCCCTGC GAGGTCTGTC GCCTGGTGCA GCCTGGCCTG 1981 TCCTGCATCA TTTGCATGGT TGTCGGGGGT GTGGGGCTGC CCTGGGGCCC GTGCCCCCAC 2041 CAGGCCAGCC CCTGCTGGGT TCAGAGGCCG AGGAGGCACT GGAGGCTGCT GGCCGTTTCC 2101 TACTGCCTGG GCTGGAGGAG GAGCTGGAAG AGGCCGTGGG CCGCATCCAC CTGGGACCCC 2161 AGGGTGGCCC GGAGTCAGTG GGTGAGGTGT TCCGCCTGGG CCGGCCCCGG CTGGCTGCCC 2221 ACTGTGCCCG CTGGACACTG GGGTCAGAGC AGTGCCCGAG GAAGCGGGGT CTGGCCCTGG 2281 TGGGGCTTGT GGAGGCAGCA GGTGAAGAGG CAGGGCCCCT GACGGAGGCT TTGCTGGCTG 2341 TGGTGATGGG GATTGAGTTG GGGGCAAGGG TCCCTGCCTA CCCAACTTTC TTGTACAAAG 2401 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac