Transcript: Human NM_001301820.1

Homo sapiens armadillo repeat containing 5 (ARMC5), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-06-04
Taxon:
Homo sapiens (human)
Gene:
ARMC5 (79798)
Length:
3664
CDS:
449..3352

Additional Resources:

NCBI RefSeq record:
NM_001301820.1
NBCI Gene record:
ARMC5 (79798)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001301820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427340 AGTACGCGAGGGAACCATTCT pLKO_005 1432 CDS 100% 4.950 6.930 N ARMC5 n/a
2 TRCN0000423932 CTATGTCGTGAGGCCATCAAC pLKO_005 1607 CDS 100% 4.950 6.930 N ARMC5 n/a
3 TRCN0000153937 CAAGGATGAATTGGCTGTGAA pLKO.1 3381 3UTR 100% 4.950 3.960 N ARMC5 n/a
4 TRCN0000156262 CCCTTTGGTGACCATTCTTCA pLKO.1 1012 CDS 100% 4.950 3.465 N ARMC5 n/a
5 TRCN0000157871 CCTGTCCTGCATCATTTGCAT pLKO.1 2948 CDS 100% 3.000 2.100 N ARMC5 n/a
6 TRCN0000156643 GAAGACAGACAGCATCCAGAA pLKO.1 1039 CDS 100% 4.050 2.430 N ARMC5 n/a
7 TRCN0000156769 GTGCATGAAGACAGACAGCAT pLKO.1 1033 CDS 100% 2.640 1.584 N ARMC5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001301820.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12618 pDONR223 100% 79.7% 79.7% None 1_588del n/a
2 ccsbBroad304_12618 pLX_304 0% 79.7% 79.7% V5 1_588del n/a
3 TRCN0000475110 TGCGACTAACCGTGGCAGGCCAGT pLX_317 16.5% 79.7% 79.7% V5 1_588del n/a
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