Construct: ORF ccsbBroadEn_12663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003496.1_s300c1, BRDN0000396116
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PANK2 (80025)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80025 PANK2 pantothenate kinase 2 NM_001324193.2 100% 100%
2 human 80025 PANK2 pantothenate kinase 2 XM_017028077.2 100% 100%
3 human 80025 PANK2 pantothenate kinase 2 XM_017028078.2 100% 100%
4 human 80025 PANK2 pantothenate kinase 2 XM_017028079.2 100% 100%
5 human 80025 PANK2 pantothenate kinase 2 XM_024452002.1 100% 100%
6 human 80025 PANK2 pantothenate kinase 2 NM_001324191.2 48% 48% 1_435del
7 human 80025 PANK2 pantothenate kinase 2 NM_024960.6 48% 48% 1_435del
8 human 80025 PANK2 pantothenate kinase 2 NM_153640.3 48% 48% 1_435del
9 human 80025 PANK2 pantothenate kinase 2 XM_005260836.4 48% 48% 1_435del
10 human 80025 PANK2 pantothenate kinase 2 XM_005260835.3 36.7% 36.7% 1_693del
11 human 80025 PANK2 pantothenate kinase 2 XM_011529364.3 24.9% 21.2% (many diffs)
12 human 80025 PANK2 pantothenate kinase 2 NM_153638.3 23.5% 23.5% 1_1308del
13 human 80025 PANK2 pantothenate kinase 2 NR_136715.2 5.1% 1_879del;1282_7877del
14 human 80025 PANK2 pantothenate kinase 2 XR_002958533.1 3.2% 1_2096del;2499_12294del
15 mouse 74450 Pank2 pantothenate kinase 2 XM_017319300.1 90.3% 98.5% (many diffs)
16 mouse 74450 Pank2 pantothenate kinase 2 XM_017319299.1 61.7% 67.3% (many diffs)
17 mouse 74450 Pank2 pantothenate kinase 2 XM_006500298.3 43.4% 47.3% (many diffs)
18 mouse 74450 Pank2 pantothenate kinase 2 XM_006500299.3 43.4% 47.3% (many diffs)
19 mouse 74450 Pank2 pantothenate kinase 2 XM_017319298.1 43.4% 47.3% (many diffs)
20 mouse 74450 Pank2 pantothenate kinase 2 NM_153501.2 27.3% 29.7% (many diffs)
21 mouse 74450 Pank2 pantothenate kinase 2 XR_001783191.1 8.2% (many diffs)
22 mouse 74450 Pank2 pantothenate kinase 2 XR_001783192.1 5.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
468
ORF length:
402
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC ATCTCGTGGA GATAGCACCA AAGTGGATAA ACTAGTACGA GATATTTATG
121GAGGGGACTA TGAGAGGTTT GGACTGCCAG GCTGGGCTGT GGCTTCAAGC TTTGGAAACA
181TGATGAGCAA GGAGAAGCGA GAGGCTGTCA GTAAAGAGGA CCTGGCCAGA GCGACTTTGA
241TCACCATCAC CAACAACATT GGCTCAATAG CAAGAATGTG TGCCCTTAAT GAAAACATTA
301ACCAGGTGGT ATTTGTTGGA AATTTCTTGA GAATTAATAC GATCGCCATG CGGCTTTTGG
361CATATGCTTT GGATTATTGG TCCAAGGGGC AGTTGAAAGC ACTTTTTTCG GAACACGAGG
421GTTATTTTGG AGCTGTTGGA GCACTCCTTG AGCTGTTGAA GATCCCGTGC CCAACTTTCT
481TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)