Transcript: Mouse NM_153501.2

Mus musculus pantothenate kinase 2 (Pank2), mRNA.

Source:
NCBI, updated 2017-05-11
Taxon:
Mus musculus (mouse)
Gene:
Pank2 (74450)
Length:
4266
CDS:
70..1401

Additional Resources:

NCBI RefSeq record:
NM_153501.2
NBCI Gene record:
Pank2 (74450)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_153501.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378466 TTCCGAGCACGAGGGATATTT pLKO_005 1338 CDS 100% 15.000 21.000 N Pank2 n/a
2 TRCN0000361874 ATGATCGTGTACTACTCAAAT pLKO_005 1484 3UTR 100% 13.200 18.480 N Pank2 n/a
3 TRCN0000361876 GGTCGTATTTGTCGGCAATTT pLKO_005 1236 CDS 100% 13.200 18.480 N Pank2 n/a
4 TRCN0000025590 CGGCAATTTCCTGAGAGTCAA pLKO.1 1248 CDS 100% 4.950 3.960 N Pank2 n/a
5 TRCN0000025589 GCAAAGGCAATCTGCACTTTA pLKO.1 521 CDS 100% 13.200 9.240 N Pank2 n/a
6 TRCN0000361875 TATTCTCAGGGCAGCGTTATT pLKO_005 1621 3UTR 100% 13.200 9.240 N Pank2 n/a
7 TRCN0000025591 GACAAATTAGTTCGAGACATT pLKO.1 1027 CDS 100% 4.950 3.465 N Pank2 n/a
8 TRCN0000025593 CCTAAAGACATCACTGCTGAA pLKO.1 376 CDS 100% 4.050 2.835 N Pank2 n/a
9 TRCN0000037734 GCTGTCTTCTTACTGGCTGTA pLKO.1 953 CDS 100% 4.050 2.835 N PANK2 n/a
10 TRCN0000025592 GCGGCCAGTAAGGAGGATCTT pLKO.1 1135 CDS 100% 1.650 1.155 N Pank2 n/a
11 TRCN0000037735 CCTCTGCTTCTGGTGAACATT pLKO.1 838 CDS 100% 5.625 3.938 N PANK2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_153501.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04170 pDONR223 100% 58.1% 61.8% None (many diffs) n/a
2 ccsbBroad304_04170 pLX_304 0% 58.1% 61.8% V5 (many diffs) n/a
3 TRCN0000475548 TGAACATATCATCATGGGACCTAT pLX_317 35.4% 58.1% 61.8% V5 (many diffs) n/a
4 ccsbBroadEn_12663 pDONR223 100% 27.3% 29.7% None (many diffs) n/a
5 ccsbBroad304_12663 pLX_304 0% 27.3% 29.7% V5 (many diffs) n/a
6 TRCN0000474214 GCCATTGCAGGTTATACACAAGAA pLX_317 100% 27.3% 29.7% V5 (many diffs) n/a
7 ccsbBroadEn_15160 pDONR223 0% 27.3% 29.7% None (many diffs) n/a
8 ccsbBroad304_15160 pLX_304 0% 27.3% 29.7% V5 (many diffs) n/a
9 TRCN0000475199 TTCCACCGTCTCTGGCTTCGCAAT pLX_317 100% 27.3% 29.7% V5 (many diffs) n/a
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