Construct: ORF ccsbBroadEn_12683
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016903.1_s300c1, BRDN0000396791
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARMC9 (80210)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001291656.2 | 76.1% | 76.2% | (many diffs) |
| 2 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352755.2 | 76.1% | 76.2% | (many diffs) |
| 3 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352756.2 | 76.1% | 76.2% | (many diffs) |
| 4 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_025139.6 | 76.1% | 76.2% | (many diffs) |
| 5 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352757.2 | 71.2% | 71.2% | (many diffs) |
| 6 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352758.2 | 71.2% | 71.2% | (many diffs) |
| 7 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352759.2 | 71% | 70.9% | 1_471del;538_539delATinsGA;1773_1774ins105 |
| 8 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511914.2 | 70.2% | 70.3% | (many diffs) |
| 9 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511915.2 | 67.2% | 65.8% | (many diffs) |
| 10 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511916.2 | 66.4% | 64.1% | (many diffs) |
| 11 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511913.2 | 66.3% | 62.6% | (many diffs) |
| 12 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_017005025.1 | 63.4% | 59.9% | (many diffs) |
| 13 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001271466.4 | 61.9% | 61.9% | (many diffs) |
| 14 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NM_001352754.2 | 61.9% | 61.9% | (many diffs) |
| 15 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511910.1 | 61.9% | 61.9% | (many diffs) |
| 16 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511912.1 | 61.7% | 58.4% | (many diffs) |
| 17 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_017005022.1 | 60.9% | 61% | (many diffs) |
| 18 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_017005021.1 | 60.8% | 60.8% | (many diffs) |
| 19 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511909.2 | 60.7% | 60.7% | (many diffs) |
| 20 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511908.2 | 60.6% | 60.7% | (many diffs) |
| 21 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_017005024.1 | 56.7% | 56.7% | (many diffs) |
| 22 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XR_923031.1 | 56% | (many diffs) | |
| 23 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511906.1 | 53.2% | 50.4% | (many diffs) |
| 24 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511905.1 | 53.1% | 50.3% | (many diffs) |
| 25 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511907.1 | 49.6% | 46.8% | (many diffs) |
| 26 | human | 80210 | ARMC9 | armadillo repeat containing 9 | NR_148040.2 | 42.5% | (many diffs) | |
| 27 | human | 80210 | ARMC9 | armadillo repeat containing 9 | XM_011511919.2 | 37.5% | 33.2% | (many diffs) |
| 28 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | NM_027456.2 | 67.8% | 71.4% | (many diffs) |
| 29 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529960.3 | 64.4% | 67.5% | (many diffs) |
| 30 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_011248111.2 | 61.1% | 60.4% | (many diffs) |
| 31 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_011248112.2 | 61% | 60.2% | (many diffs) |
| 32 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529959.3 | 58.3% | 61.4% | (many diffs) |
| 33 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XR_387202.3 | 58.2% | (many diffs) | |
| 34 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529958.3 | 58.2% | 61.3% | (many diffs) |
| 35 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529957.3 | 57.6% | 60.7% | (many diffs) |
| 36 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | NM_030184.2 | 55.2% | 58.2% | (many diffs) |
| 37 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | NM_001310702.1 | 55.2% | 58.1% | (many diffs) |
| 38 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529956.3 | 55.1% | 58.1% | (many diffs) |
| 39 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529953.3 | 54.7% | 57.6% | (many diffs) |
| 40 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529952.3 | 54.6% | 57.6% | (many diffs) |
| 41 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XM_006529954.2 | 54.5% | 57.5% | (many diffs) |
| 42 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XR_001778466.1 | 29.1% | (many diffs) | |
| 43 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XR_387200.3 | 27.3% | (many diffs) | |
| 44 | mouse | 78795 | Armc9 | armadillo repeat containing 9 | XR_387199.3 | 26.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1590
- ORF length:
- 1524
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCACCCCTCA TTTAAAGAAC TCTTCCAGGA TTCCTGGACT CCAGAGTTAA 121 AGTTGAAGTT GGAAAAGTTT CTAGCTTTAA TATCTAAAGC CAGCAACACG CCAAAGCTTT 181 TAACAATATA TAAGGAGAAT GGACAAAGTA ACAAAGAAAT CTTGCAGCAG CTCCACCAGC 241 AGCTGGTTGA AGCTGAACGT AGGTCAGTGA CATACCTCAA ACGGTACAAT AAGATCCAGG 301 CCGACTACCA CAATCTCATT GGAGTCACAG CAGAGCTGGT GGATTCTCTA GAGGCCACAG 361 TCAGCGGCAA GATGATCACC CCTGAGTACC TCCAGAGCGT CTGTGTCCGC CTGTTCAGTA 421 ACCAGATGCG GCAGAGCCTG GCGCATAGTG TGGACTTCAC GAGGCCTGGG ACGGCATCCA 481 CCATGTTACG AGCCTCCTTG GCACCCGTGA AATTGAAGGA TGTCCCATTA CTGCCCTCCT 541 TGGATTATGA GAAACTGAAG AAGGATTTGA TTTTGGGGAG TGACCGCTTG AAAGCCTTCT 601 TGTTGCAGGC TCTGCGCTGG CGCTTGACCA CATCCCATCC TGGAGAGCAG AGGGAGACCG 661 TTCTGCAAGC CTACATCAGC AATGACCTCT TGGACTGTTA TAGCCACAAC CAGAGGAGTG 721 TGCTTCAGTT GCTGCACTCC ACGAGCGACG TGGTGCGGCA GTACATGGCC AGGCTCATCA 781 ATGCTTTTGC GTCACTGGCA GAAGGTCGCC TCTACCTTGC CCAGAACACA AAGGTGCTGC 841 AGATGCTGGA GGGAAGGCTG AAGGAGGAGG ACAAGGATAT CATCACCAGG GAGAATGTTC 901 TTGGGGCCCT GCAGAAGTTC AGTCTCAGGC GCCCGCTGCA GACAGCGATG ATTCAAGACG 961 GCCTCATCTT CTGGCTGGTT GATGTTCTGA AGGACCCTGA CTGCCTGTCT GACTACACGC 1021 TGGAGTACTC GGTGGCTTTG CTCATGAACC TCTGCCTCCG CAGCACAGGG AAGAACATGT 1081 GTGCCAAGGT GGCAGGCCTC GTGCTCAAAG TCCTTTCGGA TCTTCTTGGC CATGAAAACC 1141 ATGAGATACA GCCGTATGTG AATGGAGCTC TGTACAGCAT CCTTTCTGTT CCATCCATTC 1201 GTGAGGAAGC AAGAGCAATG GGAATGGAAG ACATCCTACG CTGCTTCATC AAAGAAGGCA 1261 ATGCTGAAAT GATCCGCCAG ATAGAATTCA TCATCAAGCA GCTAAATTCC GAAGAGCTAC 1321 CAGATGGTGT TCTTGAATCT GATGATGATG AAGATGAAGA TGATGAAGAG GACCATGACA 1381 TCATGGAAGC CGATCTGGAC AAAGACGAAC TGATCCAGCC CCAGCTTGGA GAACTCTCAG 1441 GAGAGAAGCT TCTGACCACA GAGTACCTGG GGATCATGAC CAACACGGGG AAGACAAGGC 1501 GGAAGGGGCT GGCTAATGTG CAGTGGAGCG GGGATGAGCC CCTGCAAAGG CCCGTCACCC 1561 CCGGCGGCCA CAGAAACGGG TACCCAGTGT ACCCAACTTT CTTGTACAAA GTtggcatta 1621 taagaaagca ttgcttatca atttgttgca acgaac