Transcript: Human NM_001352756.2

Homo sapiens armadillo repeat containing 9 (ARMC9), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
ARMC9 (80210)
Length:
2458
CDS:
353..2350

Additional Resources:

NCBI RefSeq record:
NM_001352756.2
NBCI Gene record:
ARMC9 (80210)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001352756.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000172302 CCATGAGATACAGCCGTATGT pLKO.1 1897 CDS 100% 4.950 6.930 N ARMC9 n/a
2 TRCN0000172914 GCTGAAATGATCCGCCAGATA pLKO.1 2021 CDS 100% 4.950 6.930 N ARMC9 n/a
3 TRCN0000173098 CTTTCGGATCTTCTTGGCCAT pLKO.1 1871 CDS 100% 2.160 1.728 N ARMC9 n/a
4 TRCN0000429821 AGGATCTTGTCGCTGCATTTG pLKO_005 531 CDS 100% 10.800 7.560 N ARMC9 n/a
5 TRCN0000168259 CAATGACCTCTTGGACTGTTA pLKO.1 1438 CDS 100% 4.950 3.465 N ARMC9 n/a
6 TRCN0000172583 GCAGCTAAATTCCGAAGAGCT pLKO.1 2056 CDS 100% 2.640 1.848 N ARMC9 n/a
7 TRCN0000429160 GACTCCAAATCATTGACAATT pLKO_005 506 CDS 100% 13.200 7.920 N ARMC9 n/a
8 TRCN0000418341 ATATAAGGAGAATGGACAAAG pLKO_005 946 CDS 100% 10.800 6.480 N ARMC9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001352756.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12683 pDONR223 100% 76.1% 76.2% None (many diffs) n/a
2 ccsbBroad304_12683 pLX_304 0% 76.1% 76.2% V5 (many diffs) n/a
3 TRCN0000467154 ATCAGTGCCACCCTGGCCTAATTG pLX_317 23.5% 76.1% 76.2% V5 (many diffs) n/a
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