Construct: ORF ccsbBroadEn_12756

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000314.1_s300c1, BRDN0000385029
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FSD1L (83856)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83856 FSD1L fibronectin type III and SP... XM_011519081.2 100% 100%
2 human 83856 FSD1L fibronectin type III and SP... XM_011519080.2 96.5% 96.5% 367_399del
3 human 83856 FSD1L fibronectin type III and SP... XM_024447690.1 83.3% 83.3% 1_186del
4 human 83856 FSD1L fibronectin type III and SP... XM_005252260.3 80.9% 80.9% 1_186del;553_585del
5 human 83856 FSD1L fibronectin type III and SP... XM_017015184.1 80.9% 80.9% 1_186del;553_585del
6 human 83856 FSD1L fibronectin type III and SP... XM_017015183.1 62.4% 62.4% 1_561del
7 human 83856 FSD1L fibronectin type III and SP... NM_001287192.2 62.2% 62.2% 1_561del;927_928insAGA
8 human 83856 FSD1L fibronectin type III and SP... NM_001287191.1 61.2% 61% 1_561del;930_959del
9 human 83856 FSD1L fibronectin type III and SP... NM_001330739.2 61.1% 61.1% 1_561del;928_960del
10 human 83856 FSD1L fibronectin type III and SP... NM_001145313.3 58.6% 58.6% 1_657del
11 human 83856 FSD1L fibronectin type III and SP... XM_017015182.1 58.4% 58.4% 1_657del;1023_1024insAGA
12 human 83856 FSD1L fibronectin type III and SP... XM_005252254.2 57.4% 57.4% 1_657del;1024_1056del
13 human 83856 FSD1L fibronectin type III and SP... XM_011519078.2 57.2% 57.2% 1_696del
14 human 83856 FSD1L fibronectin type III and SP... XM_011519079.2 57% 57% 1_696del;1062_1063insAGA
15 human 83856 FSD1L fibronectin type III and SP... XM_011519077.2 56.8% 56.8% 1_675del;1042_1074del
16 human 83856 FSD1L fibronectin type III and SP... XM_017015187.1 25% 24.8% (many diffs)
17 human 83856 FSD1L fibronectin type III and SP... XM_017015185.1 23% 22.8% (many diffs)
18 mouse 319636 Fsd1l fibronectin type III and SP... XM_006537982.1 72.6% 77% (many diffs)
19 mouse 319636 Fsd1l fibronectin type III and SP... XM_017320255.1 65.4% 69.4% (many diffs)
20 mouse 319636 Fsd1l fibronectin type III and SP... NM_001195284.1 56% 59.4% (many diffs)
21 mouse 319636 Fsd1l fibronectin type III and SP... XM_006537981.3 55.8% 59.2% (many diffs)
22 mouse 319636 Fsd1l fibronectin type III and SP... XM_006537980.3 54.8% 58.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
999
ORF length:
933
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC AGAAGAAGAT AATAAGATTG ACCATTTTAT ACTGGAACAT AGGAAGACTA
121ATTTTGATGG ACTTCCACGT GTAAAGGATG AGCGATGCTG GGAGATAATT GATAATATTA
181AGGGTACTGA ATATACACTA TCAGGCTTAA AATTTGATTC AAAGTATATG AATTTCAGAG
241TGCGAGCTTG TAACAAGGCT GTGGCTGGAG AGTATTCTGA TCCAGTGACT CTAGAGACCA
301AAGCACTTAA CTTCAATTTG GATAACTCCT CATCCCATTT GAACCTGAAA GTTGAAGATA
361CATGTGTAGA GTGGGATCCT ACTGGAGGAA AAGGTCAAGA AAGTAAAATT AAAGGAAAAG
421AGAACAAGGG CAGAAGTGGT ACACCATCCC CAAAACGAAC ATCTGTAGGC TCCAGGCCAC
481CAGCAGTAAG AGGCAGTAGA GATCGTTTTA CTGGAGAATC ATACACAGTG CTGGGAGACA
541CTGCTATTGA AAGTGGACAA CATTATTGGG AGGTCAAGGC CCAGAAGGAT TGTAAATCCT
601ACAGTGTGGG AGTAGCATAC AAAACGTTGG GGAAATTTGA CCAATTGGGA AAGACAAACA
661CTAGTTGGTG TATCCATGTC AACAACTGGC TACAAAACAC ATTTGCAGCA AAGCATAATA
721ATAAAGTCAA AGCTTTGGAT GTTACTGTTC CTGAAAAAAT AGGTGTATTT TGTGATTTTG
781ATGGGGGTCA ACTTTCATTC TATGATGCAA ATTCTAAACA GTTGCTATAT TCCTTTAAGA
841CAAAATTTAC TCAGCCAGTA CTACCTGGTT TCATGGTATG GTGTGGTGGA CTTTCTTTGA
901GTACTGGGAT GCAGGTTCCA AGTGCTGTGA GAACACTTCA GAAAAGTGAA AATGGAATGA
961CTGGTTCAGC TAGCAGCCTG AACAATGTTG TTACTCAATA CCCAACTTTC TTGTACAAAG
1021Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)