Construct: ORF ccsbBroadEn_12789
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004296.1_s300c1, BRDN0000390274
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZCCHC7 (84186)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_011518050.2 | 60.7% | 48.6% | 223A>G;692delC;935_1533del |
| 2 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015197.1 | 60.7% | 48.6% | 223A>G;692delC;935_1533del |
| 3 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015198.1 | 60.7% | 48.6% | 223A>G;692delC;935_1533del |
| 4 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289119.1 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 5 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289120.1 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 6 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_001289121.1 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 7 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NM_032226.2 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 8 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251608.4 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 9 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_005251612.3 | 57.2% | 42.6% | 223A>G;692delC;935_1629del |
| 10 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015199.2 | 20.8% | 4.5% | (many diffs) |
| 11 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_017015200.1 | 20.8% | 4.5% | (many diffs) |
| 12 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_024447691.1 | 20.8% | 4.5% | (many diffs) |
| 13 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | XM_011518051.2 | 20.6% | 7.4% | (many diffs) |
| 14 | human | 84186 | ZCCHC7 | zinc finger CCHC-type conta... | NR_110317.1 | 15.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 999
- ORF length:
- 933
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TCCAAAAAAG 61 TTGGCATGAT GTTTGGTGGC TATGAGACTA TAGAAGCATA CGAAGATGAT CTTTATCGAG 121 ATGAGTCATC TAGTGAACTG AGTGTTGATA GTGAGGTGGA ATTTCAACTC TATAGCCAAA 181 TTCATTATGC CCAAGATCTT GATGATGTCA TCAGGGAGGA AGAGCATGAA GAAAAGAACT 241 CTGGGAATTC GGAATCTTCG AGTAGTAAAC CAAATCAGAA GAAGCTAGTC GTCCTTTCAG 301 ATAGTGAGGT CATCCAGCTG TCAGATGGGT CAGAGGTCAT CACTTTGTCT GATGAAGACA 361 GTATTTATAG ATGTAAAGGA AAGAATGTTA GAGTTCAAGC ACAAGAAAAT GCCCATGGTC 421 TTTCTTCTTC TCTTCAATCT AATGAGCTGG TTGATAAGAA ATGCAAGAGT GATATTGAGA 481 AGCCTAAATC TGAAGAGAGA TCAGGTGTAA TCCGAGAGGT CATGATTATA GAGGTCAGTT 541 CAAGTGAAGA GGAAGAGAGC ACCATTTCAG AAGGTGATAA TGTGGAAAGC TGGATGCTAC 601 TGGGATGTGA AGTAGATGAT AAAGATGATG ATATCCTTCT CAACCTTGTG GGATGTGAAA 661 ACTCTGTTAC TGAAGGAGAA GATGGTATAA ACTGGTCCAT CAGTGACAAA GACATTGAGG 721 CCCAGATAGC TAATAACCGA ACACCTGGAA GATGGACCAG CGGTACTATT CAGCCAACAA 781 AAACATTATC TGTAGAAATT GTGACAAACG TGGTCATTTA TCAAAAAACT GCCCCTTACC 841 ACGAAAAGTT CGTCGCTGCT TCCTGTGCTC CAGGAGAGGA CATCTCCTGT ATTCCTGTCC 901 AGCCCCCCTT TGCGAATACT GTCCTGTGCC TAAGATGTTG GACCACTCAT GTCTTTTCAG 961 ACATTCCTGG GATAAACAGT GTGACCGATG TCATATGCTA CCCAACTTTC TTGTACAAAG 1021 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac