Construct: ORF ccsbBroadEn_12867

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011087.1_s300c1, BRDN0000391626
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AGBL4 (84871)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84871 AGBL4 ATP/GTP binding protein like 4 XM_017002597.2 54.2% 52.1% (many diffs)
2 human 84871 AGBL4 ATP/GTP binding protein like 4 NM_001323575.2 52.1% 49.7% (many diffs)
3 human 84871 AGBL4 ATP/GTP binding protein like 4 XM_017002596.2 52% 50.2% (many diffs)
4 human 84871 AGBL4 ATP/GTP binding protein like 4 XM_017002595.2 51.6% 48.6% (many diffs)
5 human 84871 AGBL4 ATP/GTP binding protein like 4 NM_032785.4 51% 48.1% (many diffs)
6 human 84871 AGBL4 ATP/GTP binding protein like 4 NM_001323573.2 50.8% 48.6% (many diffs)
7 human 84871 AGBL4 ATP/GTP binding protein like 4 NM_001323574.2 49.8% 47% (many diffs)
8 human 84871 AGBL4 ATP/GTP binding protein like 4 XM_011542308.2 48.5% 46.3% (many diffs)
9 human 84871 AGBL4 ATP/GTP binding protein like 4 NR_136623.2 26.1% (many diffs)
10 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 XM_011240655.2 53.3% 53.5% (many diffs)
11 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 NM_001048189.4 48.5% 49.1% (many diffs)
12 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 XM_011240654.2 47.3% 47.9% (many diffs)
13 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 NM_001284190.1 46.1% 46% (many diffs)
14 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 XM_011240653.2 45.1% 45% (many diffs)
15 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 XM_011240656.2 44.3% 43.5% (many diffs)
16 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 NM_030231.3 42.3% 42.5% (many diffs)
17 mouse 78933 Agbl4 ATP/GTP binding protein-like 4 XM_011240652.2 41.4% 41.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
873
ORF length:
804
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGATTACTTC TTTCGGGAGC AGCTGGGCCA GAGTGTGCAA CAACGAAAGC
121TTGACCTCCT GACGATAACC AGCCCTGACA ATCTCCGGGA AGGGGCAGAG CAGAAGGTGG
181TATTCATCAC AGGACGAGTC CACCCAGGGG AAACACCCTC ATCATTTGTG TGCCAAGGGA
241TCATTGACTT CCTTGTAAGC CAGCACCCTA TTGCCTGTGT CCTCCGGGAA TACCTGGTCT
301TCAAGATCGC ACCAATGCTC AATCCTGATG GAGTCTACCT GGGCAATTAC AGGTGTTCTC
361TGATGGGATT TGATCTGAAT CGTCACTGGC TGGATCCCTC TCCATGGGTC CATCCTACCC
421TGCATGGAGT GAAACAACTC ATCGTCCAGA TGTACAACGA CCCAAAAACA AGCCTGGAGT
481TTTATATTGA CATCCATGCC CACTCCACCA TGATGAATGG CTTCATGTAT GGCAACATCT
541TTGAGGATGA GGAACGGTTC CAGAGGCAGG CCATTTTTCC CAAGCTCCTC TGCCAGAATG
601CTGAGGACTT CTCCTATTCC AGCACATCCT TTAACCGGGA CGCTGTGAAA GCAGGAACTG
661GCCGTCGCTT CCTCGGTGGA CTCCTGGACC ACACTTCCTA TTGCTACACC CTAGAGGTCT
721CCTTCTACAG CTACATCATC AGTGGCACCA CGGCTGCTGT GCCCTACACT GAAGAAGCCT
781GTATCCTTAG TCCCCACCCA GCCTTGGGCC AGCCCTCATC CAGCCGAGAG TATCCAAGTC
841TGACAGGTCA GGAATTAGGC CCCCAGCTCA GGTTGCCAAC TTTCTTGTAC AAAGTtggca
901ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)