Construct: ORF ccsbBroadEn_12938
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016150.1_s300c1, BRDN0000387243
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF468 (90333)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 17.2% | 7.1% | (many diffs) |
| 2 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 15% | 6.2% | (many diffs) |
| 3 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 15% | 6.2% | (many diffs) |
| 4 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026800.2 | 11.6% | 5% | (many diffs) |
| 5 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 11% | 4.8% | (many diffs) |
| 6 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 11% | 4.8% | (many diffs) |
| 7 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 11% | 4.8% | (many diffs) |
| 8 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026798.2 | 9.5% | 4.2% | (many diffs) |
| 9 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 8% | (many diffs) | |
| 10 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 6.7% | (many diffs) | |
| 11 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 6.7% | (many diffs) | |
| 12 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 6.3% | (many diffs) | |
| 13 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 5.9% | 1_2035del;2315_4660del | |
| 14 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 5.8% | 1_2134del;2414_4759del | |
| 15 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 5.8% | 1_2153del;2433_4778del | |
| 16 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 4.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 345
- ORF length:
- 279
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGTGGCAAGG TTTTTAATCA AAAAGCAACC TTTGCACATC ACCATAGACT 121 TCATACTGGA GAGAAACCTT ACAAATGGGA GGAATGTGAC AAAAGTTTTC AGTTGTAAAT 181 CAAACCTTAA AACACATAAG AAAATTCACA TTGAAGAGAA ACCATACAGA GGTAAGGTTT 241 GTGACAAGGT TTTTGCATAT AATGCATATC TGGCAAAACA TACTAGAATT CACACTGGAG 301 AGAAACTCAT TATAAGTGTA ATGAGTGTGG CAAGACCGTT GGTCAAAATT CACACCTTGT 361 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 421 acgaac