Construct: ORF ccsbBroadEn_13008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005187.1_s300c1, BRDN0000395938
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FNIP1 (96459)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 96459 FNIP1 folliculin interacting prot... NM_001346113.2 99.9% 99.8% 226G>T
2 human 96459 FNIP1 folliculin interacting prot... NM_133372.3 43.5% 43.3% 226G>T;1520_1526delGAGACTT;1532_3498del
3 human 96459 FNIP1 folliculin interacting prot... NM_001008738.3 41.1% 40.9% (many diffs)
4 human 96459 FNIP1 folliculin interacting prot... NM_001346114.2 39.7% 39.6% 218_219ins135;1385_1391delGAGACTT;1397_3363del
5 mouse 216742 Fnip1 folliculin interacting prot... NM_173753.4 40.2% 41.8% (many diffs)
6 mouse 216742 Fnip1 folliculin interacting prot... XM_006532847.3 40.2% 41.7% (many diffs)
7 mouse 216742 Fnip1 folliculin interacting prot... XM_006532848.2 38.3% 39.5% (many diffs)
8 mouse 216742 Fnip1 folliculin interacting prot... XM_006532849.3 37.9% 39.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1590
ORF length:
1524
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCCTACGCTG TTCCAGAAGC TCTTCAGCAA GAGGACCGGG CTGGGCGCGC
121CCGGCCGCGA CGCCCGGGAC CCAGATTGCG GGTTCAGTTG GCCTTTACCA GAGTTTGATC
181CAAGCCAGAT TCGACTGATT GTATATCAAG ACTGTGAAAG ACGAGGGAGA AATGTTTTGT
241TTGACTCCAG TGTTAAGAGA AGAAATGAGG ACATATCAGT ATCGAAACTC TGCAGTGATG
301CTCAAGTTAA AGTCTTTGGG AAATGCTGCC AACTGAAACC TGGAGGAGAC AGTTCTTCCT
361CTTTAGATAG TTCTGTGACT TCATCTTCTG ATATAAAAGA CCAGTGTCTT AAGTACCAGG
421GTTCTCGGTG CTCTTCTGAT GCCAATATGC TTGGAGAGAT GATGTTTGGC TCAGTAGCAA
481TGAGCTACAA AGGATCCACC TTAAAAATTC ATCAGATTCG TTCCCCTCCA CAGCTCATGC
541TCAGCAAAGT GTTTACTGCT CGGACTGGCA GCAGTATTTG TGGGAGTCTC AATACGCTAC
601AAGATAGTCT TGAATTCATC AATCAGGACA ACAATACATT AAAGGCTGAT AATAACACAG
661TTATTAATGG ACTGCTTGGA AATATAGGTC TTTCACAGTT CTGCAGCCCC AGGCGGGCAT
721TCTCTGAGCA GGGTCCGCTC CGCCTGATCA GGAGCGCCTC TTTCTTTGCA GTTCACAGCA
781ACCCAATGGA CATGCCTGGA AGAGAGCTCA ATGAGGACAG AGACAGTGGC ATAGCACGGT
841CTGCATCTCT CAGCAGCTTG CTGATCACTC CATTTCCTTC CCCAAACTCC TCACTTACCC
901GAAGTTGTGC CAGCAGCTAC CAGCGACGTT GGCGACGCAG CCAAACAACA AGTTTGGAAA
961ATGGGGTATT TCCTAGATGG TCTATAGAAG AAAGCTTTAA TCTCTCAGAT GAAAGCTGTG
1021GCCCTAACCC AGGAATTGTG CGGAAAAAGA AGATTGCAAT TGGGGTAATC TTTTCATTGT
1081CCAAAGATGA AGATGAAAAT AACAAATTTA ATGAATTCTT TTTTTCACAT TTTCCTCTCT
1141TTGAAAGCCA CATGAACAAA TTAAAGAGTG CAATAGAACA GGCTATGAAA ATGAGCCGGA
1201GATCAGCTGA TGCCAGTCAG AGAAGTTTGG CATATAATCG AATAGTTGAT GCCCTAAATG
1261AATTCAGAAC AACAATTTGT AATCTTTACA CGATGCCACG AATTGGAGAA CCTGTCTGGC
1321TTACAATGAT GTCGGGGACT CCAGAAAAGA ACCACCTTTG CTATCGTTTC ATGAAGGAGT
1381TCACCTTTCT AATGGAAAAT GCTTCCAAAA ATCAATTCTT GCCAGCTCTC ATTACTGCAG
1441TTCTGACCAA TCATCTTGCC TGGGTTCCAA CAGTCATGCC AAATGGACAA CCACCTATAA
1501AAATATTTTT AGAAAAGCAT TCCTCTCAGA GTGTGGACAT GTTGGCAAAG ACTCATCCAT
1561ATAACCCACT TTGGGCACAA CTGGGTATGT ACCCAACTTT CTTGTACAAA GTtggcatta
1621taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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