Transcript: Mouse NM_173753.4

Mus musculus folliculin interacting protein 1 (Fnip1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Fnip1 (216742)
Length:
6281
CDS:
119..3616

Additional Resources:

NCBI RefSeq record:
NM_173753.4
NBCI Gene record:
Fnip1 (216742)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_173753.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000192631 GTTACGTTCTTGATTGGAGAT pLKO.1 2369 CDS 100% 4.050 3.240 N Fnip1 n/a
2 TRCN0000128279 GCAGAAGCTGTCTGTATTATA pLKO.1 3248 CDS 100% 15.000 10.500 N FNIP1 n/a
3 TRCN0000239414 GGCAAAGACTCATCCATATAA pLKO_005 1597 CDS 100% 15.000 10.500 N FNIP1 n/a
4 TRCN0000200981 CGTTCTTGATTGGAGATTCTA pLKO.1 2373 CDS 100% 5.625 3.938 N Fnip1 n/a
5 TRCN0000201639 CCTCTGAGAATGTTCTGCTTT pLKO.1 6113 3UTR 100% 4.950 3.465 N Fnip1 n/a
6 TRCN0000192857 GCTCTGTTGTATTCTGTTGAA pLKO.1 5394 3UTR 100% 4.950 3.465 N Fnip1 n/a
7 TRCN0000128278 GAATGGGACATTCCAAGAAAT pLKO.1 2903 CDS 100% 13.200 7.920 N FNIP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_173753.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13008 pDONR223 100% 40.2% 41.8% None (many diffs) n/a
2 ccsbBroad304_13008 pLX_304 0% 40.2% 41.8% V5 (many diffs) n/a
3 TRCN0000474728 TGACCGGACACAAAGGTACTTTTC pLX_317 35.5% 40.2% 41.8% V5 (many diffs) n/a
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