Construct: ORF ccsbBroadEn_13044
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011135.1_s300c1, BRDN0000388724
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1QTNF3 (114899)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NM_030945.4 | 51% | 50.8% | 1_360del;640A>G |
| 2 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NM_181435.6 | 39.3% | 39.1% | 1_579del;859A>G |
| 3 | human | 100534612 | C1QTNF3-AMACR | C1QTNF3-AMACR readthrough (... | NR_037951.1 | 10.4% | 1_387del;667A>G;766_3612del | |
| 4 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NR_146599.1 | 8.8% | 1_1170del;1450A>G;1549_4276del | |
| 5 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | NM_030888.4 | 47.1% | 50.4% | (many diffs) |
| 6 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | NM_001204134.1 | 36.3% | 38.8% | (many diffs) |
| 7 | mouse | 81799 | C1qtnf3 | C1q and tumor necrosis fact... | XR_383836.3 | 14.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 444
- ORF length:
- 378
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TTCTCTGGCA ACCCACTTCA GCAATCAGAA CAGTGGGATT ATCTTCAGCA 121 GTGTTGAGAC CAACATTGGA AACTTCTTTG ATGTCATGAC TGGTAGATTT GGGGCCCCAG 181 TATCAGGTGT GTATTTCTTC ACCTTCAGCA TGATGAAGCA TGAGGATGTT GAGGAAGTGT 241 ATGTGTACCT TATGCACAAT GGCAACACAG TCTTCAGCAT GTACAGCTAT GAAATGAAGG 301 GCAAATCAGA TACATCCAGC AATCATGCTG TGCTGAAGCT AGCCGAAGGG GATGAGGTTT 361 GGCTGCGAAT GGGCAATGGC GCTCTCCATG GGGACCACCA ACGCTTCTCC ACCTTTGCAG 421 GATTCCTGCT CTTTGAAACT AAGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 481 agcattgctt atcaatttgt tgcaacgaac