Construct: ORF ccsbBroadEn_13083

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003456.1_s300c1, BRDN0000456407
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGD4 (121512)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001304483.1 99.7% 99.7% (many diffs)
2 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_005253310.4 87.3% 84.2% (many diffs)
3 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520559.3 83.5% 78.7% (many diffs)
4 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520558.2 79.8% 77% (many diffs)
5 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_024448840.1 78% 74.8% (many diffs)
6 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001370297.1 77.8% 75% (many diffs)
7 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520557.1 77.8% 75% (many diffs)
8 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001304484.1 69% 65.8% (many diffs)
9 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001330373.1 67.4% 64.9% (many diffs)
10 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001330374.1 67.4% 64.9% (many diffs)
11 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_005253308.5 67.4% 64.9% (many diffs)
12 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_005253309.1 67.4% 64.9% (many diffs)
13 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_024448837.1 67.4% 64.9% (many diffs)
14 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_024448838.1 67.4% 64.9% (many diffs)
15 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_024448839.1 67.4% 64.9% (many diffs)
16 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_139241.3 59.2% 57% (many diffs)
17 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520555.1 59.2% 57% (many diffs)
18 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520556.1 59.2% 57% (many diffs)
19 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001304481.1 53.3% 51.4% (many diffs)
20 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_011520554.1 52.5% 50.6% (many diffs)
21 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001304480.1 51.7% 49.8% (many diffs)
22 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XM_017018803.1 49.7% 47.8% (many diffs)
23 human 121512 FGD4 FYVE, RhoGEF and PH domain ... NM_001370298.1 48.8% 47% (many diffs)
24 human 121512 FGD4 FYVE, RhoGEF and PH domain ... XR_001748576.1 20.6% (many diffs)
25 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_011245874.2 55.9% 57.5% (many diffs)
26 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... NM_001301818.1 52.7% 54.2% (many diffs)
27 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... NM_139232.3 52.7% 54.2% (many diffs)
28 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_006522027.3 52.7% 54.2% (many diffs)
29 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_006522029.2 52.7% 54.2% (many diffs)
30 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_006522025.3 51.6% 53% (many diffs)
31 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_006522024.3 49.9% 51.2% (many diffs)
32 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... XM_006522023.2 48.1% 49.4% (many diffs)
33 mouse 224014 Fgd4 FYVE, RhoGEF and PH domain ... NM_001301817.1 45.6% 46.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1482
ORF length:
1413
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGAATAAA ATCTTTTCTA ATATTTCATC AATAAATGCC TTCCATAGTA
121AATTCCTCTT GCCAGAGCTG GAGAAACGAA TGCAAGAATG GGAAACTACT CCTAGAATTG
181GAGACATCCT TCAGAAATTG GCACCATTCC TTAAGATGTA TGGAGAATAT GTGAAAGGAT
241TTGATAATGC AATGGAATTG GTTAAAAACA TGACAGAACG TATTCCCCAG TTCAAATCAG
301TGGTTGAAGA AATTCAGAAA CAGAAAATCT GTGGGAGCTT AACTTTGCAG CATCACATGC
361TAGAACCTGT TCAGCGGATT CCCCGGTATG AGATGCTCCT TAAGGACTAT CTAAGGAAAT
421TGCCTCCTGA TTCCCTGGAC TGGAATGATG CTAAAAAATC ACTTGAAATT ATATCTACAG
481CTGCAAGCCA TTCTAATAGT GCAATAAGGA AAATGGAGAA CCTAAAGAAA CTCTTAGAGA
541TTTATGAAAT GTTGGGAGAA GAAGAAGACA TTGTAAACCC TTCAAATGAA CTAATAAAAG
601AAGGACAGAT CCTCAAACTA GCTGCTCGAA ACACTTCAGC ACGAGAACGC TACCTTTTCT
661TATTCAACAA CATGTTGCTG TACTGTGTGC CCAAATTCAG CTTGGTAGGC TCTAAATTCA
721CAGTTCGAAC CAGGGTTGGC ATTGATGGAA TGAAAATTGT AGAGACTCAA AATGAAGAAT
781ATCCACATAC TTTCCAGGTG TCTGGGAAAG AGAGAACACT GGAACTGCAG GCCAGTTCTG
841CACAAGACAA AGAAGAATGG ATCAAGGCCC TTCAAGAAAC CATCGATGCT TTTCATCAAA
901GGCATGAAAC CTTCAGAAAT GCAATTGCAA AGGATAATGA CATTCACTCA GAGGTTTCTA
961CTGCTGAGCT AGGGAAAAGA GCCCCAAGAT GGATCCGAGA TAATGAAGTG ACAATGTGTA
1021TGAAATGTAA AGAACCTTTC AATGCACTGA CACGAAGGAG GCATCATTGT CGAGCATGTG
1081GATATGTGGT TTGTTGGAAA TGCTCCGACT ACAAAGCTCA ACTTGAATAT GATGGTGGTA
1141AATTGAGCAA AGTTTGTAAA GACTGTTATC AAATCATAAG TGGATTCACA GACAGTGAAG
1201AAAAGAAAAG AAAAGGAATT TTAGAGATTG AATCAGCAGA AGTATCTGGA AACAGTGTGG
1261TGTGCAGCTT TCTTCAGTAT ATGGAGAAGT CAAAACCTTG GCAGAAAGCT TGGTGTGTGA
1321TCCCCAAGCA AGACCCTCTT GTGCTGTACA TGTATGGTGC CCCCCAGGTA TCTAAACCAC
1381ATCTGTCTGA AGGGACAGAT GCCCTTGGGG GCAAGGGGAA GCGAGTGGAC AGCGGACTCA
1441AAATCTGTAG AACAAGAGTT CAGGCAGTTT CACTGTTTCA TTTGCCAACT TTCTTGTACA
1501AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)